Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f03
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.12 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
 Frame = +3

Query: 270 SEFPFMVAIMSPQNQ-FLCSGVVVSNGMILTSARC--SQQAIDHVLLNTTND---KNKDS 431
           +EFP M  I        +C   ++S   +LT+A C   +      ++   +D   K + +
Sbjct: 170 NEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETN 229

Query: 432 CIALR-VKKIEKFPTYDGGEIH----KDVALIYTEK 524
              L  + K+   P YD  E       D+AL+ TEK
Sbjct: 230 ATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEK 265


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 383 CLLTTSSRSQNHSIRNYDTRTQKLILRRHNSHHKRKLTGFGCTNFV 246
           C +  +S ++ +++RNY  R     +  + S  +    G G +NF+
Sbjct: 195 CNVLATSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFL 240


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 93  YATNANKSIGDENREDIAETNEDSKEASLE 182
           Y  +++   G ENR  I E NE+ ++  L+
Sbjct: 336 YKDSSSSVEGWENRATIPELNEEFRDLRLQ 365


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 274 SFRLWWLLCLL 306
           SFR +W LC+L
Sbjct: 86  SFRFYWDLCML 96


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 274 SFRLWWLLCLL 306
           SFR +W LC+L
Sbjct: 86  SFRFYWDLCML 96


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 143 CRDKRRFQRGVAGNSYRKFFKQPHSLH*KRKYSNARNSYSQ 265
           C  +    R   GNSYR   ++  S    R+Y      Y Q
Sbjct: 230 CHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKKDRRYDQ 270


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +3

Query: 462 KFPTYDGGEIHKDVALIYTEKYNNTVVSKIKLGNYTDKK--SITDFEAFGYGLNV 620
           K+  YD G   K  A I +  YN T+   +    + DK    I  F      LNV
Sbjct: 36  KYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTDQWGDKTFVIIMKFNGVPSSLNV 90


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 274 SFRLWWLLCLL 306
           SFR +W LC+L
Sbjct: 86  SFRFYWDLCML 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,302
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)