Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f03
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26150.1 68418.m03110 protein kinase family protein contains ...    36   0.024
At1g72650.1 68414.m08401 myb family transcription factor contain...    29   2.1  
At4g13680.1 68417.m02126 hypothetical protein contains Pfam prof...    28   4.8  
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911...    28   4.8  
At4g38440.1 68417.m05432 expressed protein                             28   6.3  
At3g14160.1 68416.m01790 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.3  
At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger) fa...    28   6.3  

>At5g26150.1 68418.m03110 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 703

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = +3

Query: 132 REDIAETNEDSKEASLEIPTENFLNNLTACTRRENTLMHEIRTAKPSEFPFMVAIMSPQN 311
           R+ +   + D  +  L+    N +NNL      +NT       +KP E    +   +P  
Sbjct: 81  RKGVVLDDSDVAKTILDYVNNNLVNNLVLGASTKNTFARSFMFSKPHEVQSSIMKSTPD- 139

Query: 312 QFLCSGVVVSNGMILTSARCSQQAIDHVL 398
              CS  V+S G  + S+R +Q+ I + L
Sbjct: 140 --FCSVYVISKGGKVQSSRPAQRPITNTL 166


>At1g72650.1 68414.m08401 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 624

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 435 IALRVKKIEKFPTYDGGEIHKDVALIYTEKYNNTVVSKIK 554
           I  R+ +IE     + G +H D    YT++YN  ++ K++
Sbjct: 110 IPSRLSQIESSEAINSGLLHSDNVQPYTDQYNEEMLQKVE 149


>At4g13680.1 68417.m02126 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 354

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 69  LLNTSIFCYATNANKSIGDENREDIAETNED 161
           L N+  FC+ ++++ S+G  N   I + NED
Sbjct: 312 LTNSEAFCFPSSSSLSLGRPNFVKIVDVNED 342


>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
           Plant protein of unknown function (DUF869)
          Length = 982

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 90  CYATNANKSIGDENRED-IAETNEDSKEASLEIPTENFLNNLTACTRRENTLMHE 251
           C A N   S   + R + +   +E+  +A  EI  E+  NN+ +C R  NTL +E
Sbjct: 185 CGAENDALSRSLQERSNMLMRISEEKSQAESEI--EHLKNNIESCEREINTLKYE 237


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 156  EDSKEASLEIPTENFLNNLTACTRRENTLMHEIRTAKPSEFPFMVAIMSPQNQFLCSGVV 335
            E S++  L + + N L+ LT        L+   R+   +  P  V+I +     L +G++
Sbjct: 870  ERSQDDELALASVNCLHGLTRTIVSIQNLIESARSKMKA--PHQVSISTGDESVLANGIL 927

Query: 336  VSNGMILTSARCS 374
              +   LTS  CS
Sbjct: 928  AESLAELTSVSCS 940


>At3g14160.1 68416.m01790 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB protein
           [Caulobacter crescentus][GI:2055386]; contains Pfam
           domain PF03171 2OG-Fe(II) oxygenase superfamily
          Length = 313

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 498 DVALIYTEKYNNTVVSKIKLGNYTDKKSITDFEAFGYGLN 617
           DV L   E  ++TVV K++L +  D+KS    +  G   N
Sbjct: 11  DVTLSCQESVSSTVVQKVELSSVEDQKSAPKADGAGNSSN 50


>At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 228 RENTLMHEIRTAKPSEFPFMVAIMSPQNQFLCSGVVVS 341
           ++ + +HE  T +P  FP  V +   QNQ   +G+VV+
Sbjct: 198 QDQSFVHEFST-EPLSFPTNVLVWGDQNQVRSAGLVVT 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,856
Number of Sequences: 28952
Number of extensions: 265093
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)