Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f02
         (345 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.2  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   2.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   2.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   6.2  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    20   8.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 160 QFVSN*MLC*PPLSYRGYREEVH 92
           Q ++N  L  PP     YR+EVH
Sbjct: 73  QVLANGNLVFPPFRAEDYRQEVH 95


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 217 IYFRMFDYFEFSW*QKISVQFVSN*MLC*P 128
           ++++MF+Y    W QK + + V   +LC P
Sbjct: 200 VWYQMFEYAVGHWMQK-ATEHVIGCVLCSP 228



 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/27 (22%), Positives = 18/27 (66%)
 Frame = -2

Query: 104 RRSAQC*FFFYIMHKRYIKSIKKTLHT 24
           +R +QC + ++++  RY+ + + + H+
Sbjct: 121 KRWSQCMYMYFLLGFRYLVNDELSAHS 147


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 217 IYFRMFDYFEFSW*QKISVQFVSN*MLC*P 128
           ++++MF+Y    W QK + + V   +LC P
Sbjct: 514 VWYQMFEYAVGHWMQK-ATEHVIGCVLCSP 542



 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/27 (22%), Positives = 18/27 (66%)
 Frame = -2

Query: 104 RRSAQC*FFFYIMHKRYIKSIKKTLHT 24
           +R +QC + ++++  RY+ + + + H+
Sbjct: 435 KRWSQCMYMYFLLGFRYLVNDELSAHS 461


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 217 IYFRMFDYFEFSW*QKISVQFVSN*MLC*P 128
           ++++MF+Y    W QK + + V   +LC P
Sbjct: 747 VWYQMFEYAVGHWMQK-ATEHVIGCVLCSP 775


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 217 IYFRMFDYFEFSW*QKISVQFVSN*MLC*P 128
           ++++MF+Y    W QK + + V   +LC P
Sbjct: 747 VWYQMFEYAVGHWMQK-ATEHVIGCVLCSP 775


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 172 SATMKTRSSRTFENKCEINS 231
           +A  +T +S ++ N C INS
Sbjct: 168 AAAGRTGNSLSWNNPCSINS 187


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 28  THYHVFDTH 2
           TH H++D H
Sbjct: 104 THLHIYDLH 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,767
Number of Sequences: 336
Number of extensions: 1009
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)