Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f01
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   0.92 
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   1.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.6  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.6  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    27   2.1  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    26   2.8  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   2.8  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   3.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   3.7  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.9  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   4.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.5  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   6.5  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 153 KDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQP 332
           KD K   E K S+E + K  E  P    ++  K KE  NK   + KK+ ++      K+P
Sbjct: 215 KDKKEKKEGKPSQEASVKSVEKAP--KGLEGAK-KEKQNKKEKKDKKDKKDKKEKAPKEP 271

Query: 333 PK 338
           PK
Sbjct: 272 PK 273


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 344 QNLRRLLLEHGGQLFNVFLLFGGHFVDNLFQFIYVYIVDIRNAFEQLSRLLLGSFHFIYY 165
           +++ RLL  H    F V++   G FV  +F F+Y  +    +  +     L+ +  + YY
Sbjct: 78  RDVERLLGSHRFASFCVYMFILGMFVTPIFSFLYSLLFKNLDYIQPGPTFLIFAILYQYY 137

Query: 164 F 162
           +
Sbjct: 138 Y 138


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 240 DINKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK*P 401
           D+NK  +V+NK+ A  K  + E+  +L K   K L +L    S  +AA E + P
Sbjct: 702 DLNKCSKVMNKLRASTK--LAEV-LVLRKDTSKKLISLSLKKSLVEAAKENRMP 752


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 252 LKEVINKMAAEQKKNVEELTTMLEKQ 329
           LKE+  K+  +Q+KN E++ T+ +K+
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKK 267


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
 Frame = +3

Query: 96  FEKLQKDGKNSVDNIIKWMKDSKIIDEVKASE--EKARKLFEGVPDINNID--INKLKEV 263
           F K   DGK       KW    K I +   +     +R   E + D   +   +N+L+++
Sbjct: 47  FVKRWNDGKMKS----KWYSLGKRISQPSYARLVGPSRPTLENLQDRRELQEQLNELRKL 102

Query: 264 INKMA--AEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALE 389
             K A  ++ K+  E L  +L K+P    +A+Q      +AAL+
Sbjct: 103 SRKSAFKSQAKRETELLDEILPKEPAGSKEAMQQKKKEKRAALK 146


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
 Frame = +3

Query: 84  MDQFFEKLQKDGKNSVDNIIKW--MKDSKIIDEVK--ASEEKARKLFEGVPDINNIDINK 251
           +++F EK+  D    + +  +W   +  K   E K  A +    + F+G PD+ + D++ 
Sbjct: 145 VNEFNEKVGLDRVREILDCCEWNLSQVDKSFSEEKDDAGDFYLPERFKGSPDMQSTDLDN 204

Query: 252 LKEVINKMA-AEQKKNVE--ELTTMLEK 326
           L + +N++  A+ +KN +  +   +LEK
Sbjct: 205 LMKEMNQIRDADLEKNEKKAKALNLLEK 232


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 262 TSFNLFMSILLISGTPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFCSFSKNWS 86
           T   LF+  L+   T +N F  F    FT+   + ++I L +   L+  +   +S+NWS
Sbjct: 457 TYLTLFLLALI---TLTNGFTVFVGHTFTAGNFIAAYITLPIFLVLYV-AHKLWSRNWS 511


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +3

Query: 117 GKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKN 296
           G NSVD++++  K   ++ E  +     RKL+        +    L    NK+ +E   +
Sbjct: 296 GLNSVDSLVENAKALPLVGEYLSDYISHRKLYSSETQSQRLKREVLD--ANKIYSESVVD 353

Query: 297 VEELTTMLEKQPPKVLDALQ 356
           +++  T++E+     L  LQ
Sbjct: 354 LDKCRTLVEETIADHLQFLQ 373


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 275 HFVDNLFQFIYVYIVDIRNAFEQ 207
           HF+ ++F FIY  +V + N F +
Sbjct: 604 HFIFSVFTFIYFSLVPLNNLFHR 626


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 162 KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQPPKV 341
           K +DE+   E K +KL+ G     +    +L++   +M  E+    + +   ++    +V
Sbjct: 316 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEV 375

Query: 342 LD-ALQAGASAF 374
            D  L+A  SAF
Sbjct: 376 DDERLKAEFSAF 387


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 120 KNSVDNI---IKWMKDSKIIDEVKASEEKARKLFEGVPDINNI 239
           K  V+NI   +  + D K+   +KA  EKARK+   V D +N+
Sbjct: 88  KPKVENIRYEVNEVIDKKVAPCIKAFNEKARKIGSKVLDGDNL 130


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 258 EVINKM-AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 395
           +VI+K+ AA  K+N E +   +E +    LDA +AG   F   L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 253  NLFMSILLISGTPSNNFRAFSSEAFTSSII 164
            NLF S+L    T + N R F   A TSS I
Sbjct: 3774 NLFDSLLSSIETATKNMRTFKELAETSSFI 3803


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 258 LSIYLCLYC*YPERLRTTFAP 196
           L +Y   YC Y   +RT FAP
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAP 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,314
Number of Sequences: 5004
Number of extensions: 28831
Number of successful extensions: 101
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)