Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e23
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   204   7e-54
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   2.7  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   3.5  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   4.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   4.7  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   6.2  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   8.2  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  204 bits (499), Expect = 7e-54
 Identities = 96/126 (76%), Positives = 109/126 (86%)
 Frame = +3

Query: 255 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 434
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 435 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 614
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120

Query: 615 RIHRLA 632
           RIHRLA
Sbjct: 121 RIHRLA 126



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +1

Query: 634 RYYKTKSVLPPNWKYESSTASALVA 708
           RYY+    LPP WKYES+TASALVA
Sbjct: 127 RYYRKVGALPPTWKYESATASALVA 151


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 339 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 512
           ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+  PE
Sbjct: 66  SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121

Query: 513 DLYYLIKKAVAMRKHLE 563
            +  L K  +  +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 459 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESR 617
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKK 234


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 329  PGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNRRSDNDNKRIQKDGCRKTN 177
            P R  +A+R+ +       +V  T    F L    D+DN   QKD   KT+
Sbjct: 1352 PSRQNSALRREQSVRAPPSNVAVTSANSFELLEEHDHDNDGGQKDSNSKTS 1402


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -2

Query: 386 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 231
           TL+SK    FL+    Q Q      AV QR   D L  SV +  V   +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 49  NEYFYFVLFFLISICMYFLSFTFF 120
           +EY YF LFF I++ + F  F  +
Sbjct: 144 DEYGYFYLFFSIALFLLFSDFLIY 167


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 456 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 581
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,767
Number of Sequences: 5004
Number of extensions: 61185
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)