Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e23
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   203   1e-52
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  203 bits (495), Expect = 1e-52
 Identities = 92/126 (73%), Positives = 114/126 (90%)
 Frame = +3

Query: 255 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 434
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 435 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 614
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 615 RIHRLA 632
           RIHRLA
Sbjct: 121 RIHRLA 126



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +1

Query: 634 RYYKTKSVLPPNWKYESSTASALVA 708
           RYYKTK  LPP WKYES TA++LV+
Sbjct: 127 RYYKTKRQLPPTWKYESGTAASLVS 151


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = +3

Query: 201 LDSLVVVVRSAI**KAANMGRMHAPGKGISQSALPYRRSVPTWL 332
           LD++V+ V+++I    A + RMH   +G+++S  PY + + T++
Sbjct: 443 LDAIVIEVKNSI---RAIVARMHVETRGMTKSVAPYMQELLTYI 483


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 284 YLPVGAALPPQ-CP-YLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKI 448
           YL V A LP   CP +  E D +R      QTWK G+   T  C A    +S P  I
Sbjct: 93  YLAVKADLPNNTCPAFPFETDIKR---PGNQTWKSGNGWTTRLCKAGWTLFSRPDSI 146


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = +1

Query: 79  LISICMYFLSFTFFNGWPFPVSLTCQAWQYCH*FVFRQPSFWILLLSLSDRRFSKKPQTW 258
           L+  C  FL    F  W       C  WQ C    F +  FW +LL +        P T+
Sbjct: 412 LLFRCTAFLDIAMF--WMNVTYAYCLQWQLCCRLGFFRFVFWAMLLGVVSTTVMFIPMTY 469

Query: 259 VV 264
           V+
Sbjct: 470 VM 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,326
Number of Sequences: 27780
Number of extensions: 345684
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)