Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e23
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 371 FVNLFLYIVGSQFQPGR 321
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 371 FVNLFLYIVGSQFQPGR 321
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 371 FVNLFLYIVGSQFQPGR 321
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 126 LAISCIIDMSSLAILSLVCLPAAIFLDSLVVVVRSAI 236
           +AIS   D  S   ++  CL   IFL  +VV  R+ I
Sbjct: 108 VAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGI 144


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 126 LAISCIIDMSSLAILSLVCLPAAIFLDSLVVVVRSAI 236
           +AIS   D  S   ++  CL   IFL  +VV  R+ I
Sbjct: 108 VAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGI 144


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 126 LAISCIIDMSSLAILSLVCLPAAIFLDSLVVVVRSAI 236
           +AIS   D  S   ++  CL   IFL  +VV  R+ I
Sbjct: 108 VAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGI 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,255
Number of Sequences: 438
Number of extensions: 4414
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)