Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e23
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   210   5e-55
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   210   9e-55
At5g11230.1 68418.m01312 phosphate translocator-related low simi...    32   0.33 
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    31   1.0  
At1g65720.1 68414.m07459 expressed protein                             29   2.3  
At5g25400.1 68418.m03013 phosphate translocator-related low siim...    28   5.4  
At4g32390.1 68417.m04612 phosphate translocator-related low simi...    28   5.4  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   7.1  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    28   7.1  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   7.1  
At2g25520.1 68415.m03055 phosphate translocator-related low simi...    28   7.1  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  210 bits (514), Expect = 5e-55
 Identities = 100/126 (79%), Positives = 112/126 (88%)
 Frame = +3

Query: 255 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 434
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 435 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 614
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 615 RIHRLA 632
           RIHRLA
Sbjct: 121 RIHRLA 126



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = +1

Query: 634 RYYKTKSVLPPNWKYESSTASALVA 708
           RYYK    LPP WKYES+TAS LVA
Sbjct: 127 RYYKKTKKLPPVWKYESTTASTLVA 151


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  210 bits (512), Expect = 9e-55
 Identities = 100/126 (79%), Positives = 111/126 (88%)
 Frame = +3

Query: 255 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 434
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 435 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 614
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 615 RIHRLA 632
           RIHRLA
Sbjct: 121 RIHRLA 126



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = +1

Query: 634 RYYKTKSVLPPNWKYESSTASALVA 708
           RYYK    LPP WKYES+TAS LVA
Sbjct: 127 RYYKKTKKLPPVWKYESTTASTLVA 151


>At5g11230.1 68418.m01312 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 351

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 1   AITSTEVRNNY*LFIHNEYFYFVLFFLISICMYFLSFTFFNGWPFPVSLTCQAWQYCH*F 180
           A++ + ++N    + +   + F+ F +I    Y L    +N WPFP+SLT     +C   
Sbjct: 6   ALSESVIKNIVLSYSYVAIWIFLSFTVIVYNKYILDKKMYN-WPFPISLTMIHMSFCSTL 64

Query: 181 VF 186
            F
Sbjct: 65  AF 66


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 291 GRYPYQERAYDPCLRLFT 238
           GRYP+  RAYDPC   ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 463 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 308
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RR
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64


>At5g25400.1 68418.m03013 phosphate translocator-related low
           siimilarity to phosphoenolpyruvate/phosphate
           translocator precursor [Mesembryanthemum crystallinum]
           GI:9295275, SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea}
          Length = 349

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 64  FVLFFLISICMYFLSFTFFNGWPFPVSLTCQAWQYCH*FVF 186
           F+ F +I    Y L    ++ WPFP+SLT     +C    F
Sbjct: 27  FLSFTVIVYNKYILDKKMYD-WPFPISLTMIHMSFCSTLAF 66


>At4g32390.1 68417.m04612 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 350

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 64  FVLFFLISICMYFLSFTFFNGWPFPVSLTCQAWQYC 171
           F+ F +I    Y L    +N WPFP++LT     +C
Sbjct: 27  FLSFTVIVYNKYILDKKMYN-WPFPITLTMIHMAFC 61


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 341 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 457
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 502 SGARPIAFMIRRIFLPVTNLTWATPCESLSITP 404
           +  R I +++RR+ LP+ N  +  PC  L+  P
Sbjct: 212 ASGRQITWLLRRLTLPIRNALFEEPCLFLNSHP 244


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 335 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 421
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


>At2g25520.1 68415.m03055 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275
          Length = 347

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 64  FVLFFLISICMYFLSFTFFNGWPFPVSLTCQAWQYC 171
           F+ F +I    Y L    +N WPFP++LT     +C
Sbjct: 27  FLSFTVIVYNKYILDKKMYN-WPFPITLTMIHMGFC 61


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 282 GISQSALPYRRSVPTWL-KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 458
           GI+   + Y   +     K + DD+     +L K G  P  I           +  FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247

Query: 459 KKILRIMKAMGLAPDL 506
            +I  +MK+  L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,395
Number of Sequences: 28952
Number of extensions: 319998
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)