Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e22
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 30 1.3
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 29 2.3
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family... 28 4.0
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family... 28 4.0
At2g23450.2 68415.m02800 protein kinase family protein contains ... 27 6.9
At2g23450.1 68415.m02799 protein kinase family protein contains ... 27 6.9
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00... 27 9.1
At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi... 27 9.1
At2g26160.1 68415.m03139 F-box family protein contains F-box dom... 27 9.1
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +2
Query: 176 GGFPTVTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALATATKAKGPEILCSRLKDV 355
G F P L +LSQ P + V +E +I+C+ + + K G + R
Sbjct: 164 GEFEIARPTKRYLSILSQVPRVFVGTSEELKLLVRIMCHEMRRSMKHVGIHVPPWRRNGY 223
Query: 356 NELKLSAFYK 385
+ K FYK
Sbjct: 224 MQAKWFGFYK 233
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Frame = +2
Query: 176 GGFPTVTPDPGSLPLLSQTPSLVVKCDQEGDN---------TCKILCNALATATKAKGPE 328
G F P L LL+ S V+CD +G N T L NAL T + P+
Sbjct: 198 GNFNYSAFSPTKLELLTFFTSGPVQCDSDGCNLQLVRTPNSTLPPLINALEAYTIIEFPQ 257
Query: 329 ILCSRLKDVNELK-LSAFYKTCDKPW 403
+ S L DVN +K + A Y+ W
Sbjct: 258 LETS-LSDVNAIKNIKATYRLSKTSW 282
>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
protein low similarity to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 349
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 428 APLCCENSQVKVCSSVVTLKSTVQPE 505
A + C S++ VCS V L S+ QP+
Sbjct: 322 AEIICSESEITVCSDVAYLDSSQQPQ 347
>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
protein low similarity to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 488
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 428 APLCCENSQVKVCSSVVTLKSTVQPE 505
A + C S++ VCS V L S+ QP+
Sbjct: 461 AEIICSESEITVCSDVAYLDSSQQPQ 486
>At2g23450.2 68415.m02800 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 534 LLINYMVVFASGCTVDFSVTTDEQTFTWEFSQQSGASAVMFA*LHGLSH 388
L + Y F++GC++ F + E+ +FS Q+ +F GLSH
Sbjct: 55 LTLPYPFGFSNGCSIRFDCSAAEKPMIGDFSVQNVTENSIFV---GLSH 100
>At2g23450.1 68415.m02799 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 534 LLINYMVVFASGCTVDFSVTTDEQTFTWEFSQQSGASAVMFA*LHGLSH 388
L + Y F++GC++ F + E+ +FS Q+ +F GLSH
Sbjct: 55 LTLPYPFGFSNGCSIRFDCSAAEKPMIGDFSVQNVTENSIFV---GLSH 100
>At4g33290.1 68417.m04736 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 430
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 80 ILMLVGINYFLLAEVVPVSIAPFEDRKGNCSC 175
++ML+ N FL++ V+ + P + KG SC
Sbjct: 59 VIMLIDYNLFLMSAVLMDDVDPSIEFKGKLSC 90
>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
to CLC-b chloride channel protein GB:CAA96058 from
[Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
33632-33638 (1996))
Length = 780
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 14 YSFNIENEHKMGSLRVYFCDICILML 91
+S N NE MGSL ++F CIL L
Sbjct: 442 FSSNTPNEFGMGSLWIFFVLYCILGL 467
>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
Pfam:PF00646
Length = 359
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 262 FLITFDDQTWCLRK*GQTSRIW 197
F + DD+ WC + ++SRIW
Sbjct: 160 FAVGQDDKIWCCKSGEESSRIW 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,085
Number of Sequences: 28952
Number of extensions: 248171
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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