Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e20
         (279 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E46784 Cluster: PREDICTED: similar to endonuclea...    31   5.0  
UniRef50_A0EGW2 Cluster: Chromosome undetermined scaffold_96, wh...    31   6.6  

>UniRef50_UPI0000E46784 Cluster: PREDICTED: similar to
           endonuclease/reverse transcriptase; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease/reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 576

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 241 FFEQTVLFRVIKLNNDQ*TLHDSSAIVLNNSVSTSD--DKSVTHTRCIYTQT 92
           F +  +L+R IK  ND+ T H    + L N++S  +  DK V    C+   T
Sbjct: 235 FADDCILYRAIKTINDKVTHHHYLGVELTNNLSCENQVDKVVNKANCMLGMT 286


>UniRef50_A0EGW2 Cluster: Chromosome undetermined scaffold_96, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_96,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 384

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -3

Query: 274 FFSRINFIYT*FFEQTVLFRVIKLNNDQ*TLHDSSAIVLNNSV 146
           FFSR+  +YT    Q++ F V  +NN Q T  D +A  LN SV
Sbjct: 61  FFSRVKDLYTHLGWQSIKFIVKDINNPQLTADDINA--LNQSV 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,032,868
Number of Sequences: 1657284
Number of extensions: 4102559
Number of successful extensions: 7904
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7904
length of database: 575,637,011
effective HSP length: 70
effective length of database: 459,627,131
effective search space used: 10111796882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)