Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e20
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    26   3.7  
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050     26   3.7  
01_01_1104 + 8747053-8747478                                           26   3.7  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    25   8.6  

>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 181 HDSSAIVLNNSVSTSDDKSVTHTRCIYTQ 95
           H SS   +N S+  +DD+  +HT+ I TQ
Sbjct: 117 HPSSNEYINASLIETDDQGQSHTKFISTQ 145


>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
          Length = 709

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 13  RITKVFVKNLKICGILKDEGSTLILPLFECKYI 111
           R+TK+ ++NL + G+L    +TL+ PL E + +
Sbjct: 75  RVTKLVLENLNLTGVLT---ATLLAPLSELRVL 104


>01_01_1104 + 8747053-8747478
          Length = 141

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 148 VSTSDDKSVTHTRCIYTQTMVESGSNLRL*EFHIFSDFLR 29
           + T+D    TH +C+     V  GSN  +  F   +D  +
Sbjct: 32  IDTTDCSKETHAKCLMAALNVNGGSNQAVVAFLTMTDMFK 71


>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
            3299528-3299531,3299814-3299949,3300034-3300090,
            3301689-3301786,3301876-3301947,3302056-3302228,
            3302552-3302698,3303113-3303336,3305300-3305306,
            3305634-3305800,3306033-3306068,3306787-3307004,
            3307115-3307172,3307761-3307842,3308045-3308207,
            3308594-3308598,3308700-3308885,3308969-3309548,
            3309642-3309774,3309880-3309948,3310184-3310395,
            3310654-3310891,3311228-3311386,3311501-3311926,
            3312010-3312447,3312593-3312712,3312784-3313266,
            3313471-3314009,3314178-3314667,3314836-3314904,
            3315735-3315839,3315940-3316158,3316254-3316508,
            3316602-3316651,3317175-3317284,3317372-3317454,
            3317560-3317772,3317870-3318040
          Length = 2391

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 181  HDSSAIVLNNSVSTSD-DKSVTHTRCIYTQTM 89
            H  +++ ++  +  SD DKSVTHTR + +  +
Sbjct: 1214 HSEASLSVSKIIVGSDSDKSVTHTRVLTSMAL 1245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,253,970
Number of Sequences: 37544
Number of extensions: 97255
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)