Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e20
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.3  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  26   5.4  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            26   5.4  
SB_44101| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 135 SDVLTLLFNTIADESCNVY*SLFSFITRNKTVCSKNY 245
           +D LT++F  +   +CN Y +LF  I   K    KNY
Sbjct: 85  ADWLTVMFGDVRACACNKYWTLFHGIDIEKKHPKKNY 121


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 178 DSSAIVLNNSVSTSDDKSVTHTRCI 104
           +S  I L  + STS D+S TH  C+
Sbjct: 785 ESGMIALEKNASTSLDESSTHAYCL 809


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 162 TIADESCNVY*SLFSFITRNKTVC 233
           T+++  CN Y  LF  +T+   VC
Sbjct: 631 TLSESECNCYSLLFQHLTKEDLVC 654


>SB_44101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/53 (16%), Positives = 28/53 (52%)
 Frame = -3

Query: 223 LFRVIKLNNDQ*TLHDSSAIVLNNSVSTSDDKSVTHTRCIYTQTMVESGSNLR 65
           +FR++K++  + +L     +  N  ++ ++  +V    C+  Q + ++  N++
Sbjct: 1   MFRLVKIDGPKGSLLKRHCVTTNYFINRNNCIAVAALECVQYQNLTQANRNIK 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,000,314
Number of Sequences: 59808
Number of extensions: 134832
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)