Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e20
         (279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006832-6|AAY55905.1|  170|Caenorhabditis elegans Hypothetical ...    26   3.5  
Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    25   6.1  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    25   6.1  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    25   6.1  

>AC006832-6|AAY55905.1|  170|Caenorhabditis elegans Hypothetical
           protein ZK355.7 protein.
          Length = 170

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 226 VLFRVIKLNNDQ*TLHDSSAIVLNN 152
           +L  +I  NNDQ  ++D+ ++ LNN
Sbjct: 120 LLNNIISANNDQLVMYDNPSLFLNN 144


>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 129 LSSDVLTLLFNTIADESCNVY*SLFSFITRNKT 227
           LSS +LTL  +  A + CN++  L      N T
Sbjct: 6   LSSHLLTLFNSNAASQYCNIFFFLLRLFLSNNT 38


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory
          receptor Odr-10 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 4  DVVRITKVFVKNLKICGILKDEGSTL 81
          D+V +T  F  N+ + G+LK  G  L
Sbjct: 14 DIVGVTLTFCVNIVLLGLLKTRGKNL 39


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
          abnormal protein10 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 4  DVVRITKVFVKNLKICGILKDEGSTL 81
          D+V +T  F  N+ + G+LK  G  L
Sbjct: 14 DIVGVTLTFCVNIVLLGLLKTRGKNL 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,189,451
Number of Sequences: 27780
Number of extensions: 106845
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)