Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e20
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1...    27   1.9  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    26   4.3  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    25   5.7  
At1g19025.1 68414.m02368 DNA cross-link repair protein-related c...    25   9.9  

>At4g16680.1 68417.m02519 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 883

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 113 TMYLHSNNGRIRVEPSSLRIPHIFRFFTKTFVIRTT 6
           T+Y+H N+G     PS   + H     TK ++  TT
Sbjct: 789 TVYVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTT 824


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 208 KLNNDQ*TLHDSSAIVLNNSVSTSDDKSVTHT 113
           K+NN + T H S+ + L + + +  +K + H+
Sbjct: 388 KINNPKHTAHQSNPLSLQHDIDSEHEKLLAHS 419


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 43   KICGILKDEGSTLILPLFECKYIVY 117
            K+CG+ KD+ S L+    + +Y  Y
Sbjct: 1291 KVCGVDKDDDSVLLCDTCDAEYHTY 1315


>At1g19025.1 68414.m02368 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 549

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 133 DKSVTHTRCIYTQT 92
           ++ V HT+C+YT+T
Sbjct: 453 ERKVIHTQCVYTKT 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,544,630
Number of Sequences: 28952
Number of extensions: 90888
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)