Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e19
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.083
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.14
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 29 0.33
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 0.58
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 2.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 2.3
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 2.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 2.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 3.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.1
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 4.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 4.1
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 4.1
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 5.4
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 5.4
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.4
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 7.2
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.2
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.2
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 24 9.5
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 24 9.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 9.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 24 9.5
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 31.1 bits (67), Expect = 0.083
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 367 FDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLA 215
F R + A P TV + + P A RPTPP V S++ A + +A
Sbjct: 336 FTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAEPVA 386
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 310 STPLERARPRPTPPLVSWSATPASATNTPSLATARLPHS 194
STP ++ P PP + +ATP +A N S A A P S
Sbjct: 268 STPTDQTLRPPNPPAANGNATPVTAVNNVS-AVADSPQS 305
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 29.1 bits (62), Expect = 0.33
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -2
Query: 316 AVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEP 158
+ STP A P P PP ++ P PS A + TVA A P
Sbjct: 78 STSTPKSAASPAPNPP----ASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNP 126
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 0.58
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 149 GCDSAFCTFCVSVDILPL 96
GCD A+ T+C+++D +P+
Sbjct: 142 GCDDAYHTYCLNMDAVPI 159
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 1.0
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 334 ETVLAVAVSTPLERARPR-PTPPLVSWSATPASATNTPSLATARLPHSIATVARTA 170
+T ++ A P E + P P SATPA+ TPS AT+ S A A A
Sbjct: 320 KTNVSAAYEKPAELSSSSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINA 375
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2
Query: 364 DCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIAT 185
D S+ T ET + S+ P + SWS++ +T + AT SIAT
Sbjct: 921 DSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980
Query: 184 VARTAS 167
+ + S
Sbjct: 981 ASVSGS 986
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 236 NEHSFSCDSTPASLDSDGRPNGIA*TYRFGCDSAFCTFCVSV 111
N S + DST S RPN IA RF C S+ C + +V
Sbjct: 388 NLSSVANDSTVYS----NRPNRIAEIGRFNCSSSGCDYATNV 425
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 236 NEHSFSCDSTPASLDSDGRPNGIA*TYRFGCDSAFCTFCVSV 111
N S + DST S RPN IA RF C S+ C + +V
Sbjct: 308 NLSSVANDSTVYS----NRPNRIAEIGRFNCSSSGCDYATNV 345
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 236 NEHSFSCDSTPASLDSDGRPNGIA*TYRFGCDSAFCTFCVSV 111
N S + DST S RPN IA RF C S+ C + +V
Sbjct: 308 NLSSVANDSTVYS----NRPNRIAEIGRFNCSSSGCDYATNV 345
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 319 VAVSTPLERARPRPTPPLVS--WSATPASATNTPSL 218
V+V++PL+ P+PPL S SA+P+ + SL
Sbjct: 321 VSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESL 356
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 322 AVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATA 209
A + S+ L +RP PTPP S S++P ++ T T+
Sbjct: 244 ATSSSSRLYPSRPAPTPP-ASSSSSPLLSSQTVKTTTS 280
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 3.1
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = -2
Query: 352 SARATP-----ETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATAR---LPH 197
SA +TP T A STPL + S S+TP S+ N+ + +A L
Sbjct: 302 SASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361
Query: 196 SIATVARTASLEP 158
+T A +AS P
Sbjct: 362 VNSTTATSASSTP 374
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 223 KECSLQKQESQTTIPVAVSVAVWL 294
+E +L Q S+ TIP VA+WL
Sbjct: 38 RELALHTQLSKHTIPTTKDVALWL 61
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 244 QESQTTIPVAVSVAVWLVQAVSTL-----RPQVPSQASLALIACSRSFCAVLCTLCD 399
++S +P+A + WL++ V++L P + + L+ FC+++C + +
Sbjct: 90 EQSTLRVPMASLLIFWLLKVVTSLLILLFSPYIAITSMARLLTLITLFCSLVCFISE 146
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -2
Query: 265 VSWSATPASATNTPSLATARLPHSIATV 182
+SW+++ ++ATNT S +++ S+ +V
Sbjct: 162 ISWNSSTSAATNTSSSSSSSSQSSVVSV 189
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 295 RARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVA 179
+A P P PP+ A P SA T +L A P ++
Sbjct: 1879 QAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAIS 1917
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 300 SGVDTATASTVSGVARADRLQSKFLCCPVYFVRLEKCLTNCGCL 431
SG +T G D ++ K L + F +KCL + CL
Sbjct: 267 SGKAQIKITTAFGNCSFDEIERKLLSFVMLFENTDKCLIDSECL 310
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 427 HPQFVKHFSSRTKYTGQHRNFDCKRSARATPETV 326
HP K +++ K G + DC R AR P T+
Sbjct: 274 HPTPGKFDAAKAKSLGITKGLDCGRLARGEPVTL 307
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 150 RLRQRVLHILRLRRHFAIVNSVNLLQNKTASQISIIA 40
R+ +R H++ L +F ++ + LQN +S++A
Sbjct: 689 RMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLA 725
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 280 PTPPLVSWSATPASATNTPSLATARLPHSIAT 185
P+P + TP SAT P+ +A H+ T
Sbjct: 567 PSPGSATTKPTPGSATTKPTPVSATEEHAAGT 598
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 292 ARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLE 161
A +PTP + TP SAT + T + P A TA E
Sbjct: 572 ATTKPTPGSATTKPTPVSATEEHAAGTTK-PAPAAGATATAENE 614
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 316 AVSTPLERARPRPTPPLVSWSATPASATNTPSL 218
A STP P PP+ S S TP + PSL
Sbjct: 408 AYSTPARPTESPPPPPISSSSTTP-RPDDKPSL 439
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 172 PFGRPSLSSEAGVLSQEKECSLQKQESQTT 261
P+ RP S G+L Q+++ S + E T
Sbjct: 533 PYSRPLQSQSTGILQQQQQQSAPRLEPTKT 562
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = -2
Query: 280 PTPPLVSWSATPASATNTPSLATARLPHSIATVARTAS 167
P P ++TP+++++ PS+ ++ SI+++ T S
Sbjct: 102 PFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTS 139
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 304 VSTLRPQVPSQASLALIACSRSFCAVLC 387
V T+ P + S A A +ACS V C
Sbjct: 386 VETILPYIQSSAEAAALACSGGSDGVTC 413
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 138 RVLHILRLRRHFAIVNSVNL 79
R+ HIL+++RHF +++ L
Sbjct: 37 RIKHILKVQRHFNLISEDEL 56
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 174 RHRLN-LPLRLRQRVLHILRLRRHFAIVNSVNLL 76
R R++ LP+ RQ +L++L L FA+ +S NL+
Sbjct: 168 RRRIDELPIPNRQLLLYLLDLLSVFAMNSSKNLM 201
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.2 bits (50), Expect = 9.5
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 403 SSRTKYTGQHRNFDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTP 224
+S+ KYT + ++D S+ A+P + ++PL +A P+ TP + +
Sbjct: 452 NSKAKYTAKQPSYDRAGSSLASP----TKSSASPLVKA-PKETPERLCTENQSTENEDQA 506
Query: 223 SLATARLP 200
+L + LP
Sbjct: 507 NLKESELP 514
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 9.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 184 PSLS--SEAGVLSQEKECSLQKQESQTTIPVAVSVAVWLVQAVSTLRPQVPSQASL 345
PSL+ + +G S + +++Q +T PV+ SV L+ AVS++ V + L
Sbjct: 148 PSLTWHTSSGDDSNQNPFFVRRQSQSSTSPVSDSVDENLLSAVSSVTESVETNLHL 203
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 280 PTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLE 161
PTP V S P +++ +LAT RLP + V T ++E
Sbjct: 983 PTP-YVKASCRPYMISSS-NLATTRLPRDLVDVYETYNIE 1020
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,141
Number of Sequences: 5004
Number of extensions: 27212
Number of successful extensions: 156
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -