Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e19
(452 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 31 0.36
At1g21590.1 68414.m02699 protein kinase family protein contains ... 29 1.9
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 28 3.4
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 28 3.4
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 3.4
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 28 3.4
At5g59010.1 68418.m07392 protein kinase-related low similarity t... 27 4.5
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 27 4.5
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 27 4.5
At1g19740.1 68414.m02467 ATP-dependent protease La (LON) domain-... 27 5.9
At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ... 27 7.8
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ... 27 7.8
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 27 7.8
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 27 7.8
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 27 7.8
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 27 7.8
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 31.1 bits (67), Expect = 0.36
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 343 ATPETVLAVA-VSTPLERARPRP-TPPLVSWSATPASATNTPSLATARLPHSIATVARTA 170
ATP V V+TP A P P TPP +ATPA AT PS+A + P + T + A
Sbjct: 35 ATPPPVATPPPVATPPPAATPAPATPPP---AATPAPATTPPSVAPS--PADVPTASPPA 89
Query: 169 SLEP 158
P
Sbjct: 90 PEGP 93
>At1g21590.1 68414.m02699 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 756
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 97 CKLCKFVTK*NSFSNKHHSK-INLLIFCFENN 5
C L FV + + + HH I+LL +CFENN
Sbjct: 444 CVLKDFVAEIDIITTLHHKNVISLLGYCFENN 475
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 358 KRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPS 221
+RS+R TP T + S + R P+P VS + +TPS
Sbjct: 35 RRSSRGTPSTKVITPASATRKSERLAPSPASVSKKSGGIVKNSTPS 80
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 358 KRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPS 221
+RS+R TP T + S + R P+P VS + +TPS
Sbjct: 35 RRSSRGTPSTKVITPASATRKSERLAPSPASVSKKSGGIVKNSTPS 80
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 132 LHILRLRRHFAIVNSVNLLQNKT 64
+ +L L R F+IVN VN+++ KT
Sbjct: 26 IQLLTLFREFSIVNEVNIIKEKT 48
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 132 LHILRLRRHFAIVNSVNLLQNKT 64
+ +L L R F+IVN VN+++ KT
Sbjct: 26 IQLLTLFREFSIVNEVNIIKEKT 48
>At5g59010.1 68418.m07392 protein kinase-related low similarity to
serine/threonine/tyrosine-specific protein kinase APK1,
Arabidopsis thaliana, SP|Q06548 PIR:S28615; contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 489
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 292 ARPRPT-PPLVSWSATPASATNTPSLATARLPHSIATVARTASLEP 158
AR RP LVS A T+ PS +PH A+ T SL P
Sbjct: 293 ARERPNVKSLVSSLAPLQKETDIPSHVLMGIPHGAASPKETTSLTP 338
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 310 STPLERARP-----RPTPPLVSWSATPASATNTPSL 218
STP RP PT P SWSAT A +T +PSL
Sbjct: 44 STPRSETRPDSVTCSPTIPCQSWSAT-AISTPSPSL 78
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 310 STPLERARP-----RPTPPLVSWSATPASATNTPSL 218
STP RP PT P SWSAT A +T +PSL
Sbjct: 44 STPRSETRPDSVTCSPTIPCQSWSAT-AISTPSPSL 78
>At1g19740.1 68414.m02467 ATP-dependent protease La (LON)
domain-containing protein weak similarity to SP|P36774
ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus
xanthus}; contains Pfam profile PF02190: ATP-dependent
protease La (LON) domain
Length = 278
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 97 CKLCKFVTK*NSFSNKHHSKIN 32
CKL F +SFS KHH+ N
Sbjct: 41 CKLLSFRCSSSSFSEKHHNNAN 62
>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 412 KHFSSRTKYTGQHRNFDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSA 251
+ F+ +GQH+N A P +LA +V + A ++SW++
Sbjct: 1272 RQFNVEILNSGQHKNRVLSSKASGEPPLLLAASVHCAVRAAVKEARKQILSWNS 1325
>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 412 KHFSSRTKYTGQHRNFDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSA 251
+ F+ +GQH+N A P +LA +V + A ++SW++
Sbjct: 1272 RQFNVEILNSGQHKNRVLSSKASGEPPLLLAASVHCAVRAAVKEARKQILSWNS 1325
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -2
Query: 382 GQHRNFDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPS--LATA 209
G + + C S + P ++ + P + P P PP S P + +PS T
Sbjct: 56 GDSKVWKCTYSNGSAPAISISPSTPIPSTPSTPSPPPPAPKKSPPPPTPKKSPSPPSLTP 115
Query: 208 RLPH 197
+PH
Sbjct: 116 FVPH 119
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 286 PRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEP 158
PRP P V+ S P S P +A+ R+P A V RT S +P
Sbjct: 94 PRPASPRVA-SPRPTS----PRVASPRVPSPRAEVPRTLSPKP 131
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 286 PRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLEP 158
PRP P V+ S P S P +A+ R+P A V RT S +P
Sbjct: 93 PRPASPRVA-SPRPTS----PRVASPRVPSPRAEVPRTLSPKP 130
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 286 PRPTPPLVSWSATPASATNTPSLATARLP 200
P P PP+ S +TP+ ++ + S+AT P
Sbjct: 574 PPPPPPISSLRSTPSPSSTSNSIATQGPP 602
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,457,276
Number of Sequences: 28952
Number of extensions: 146028
Number of successful extensions: 704
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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