Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e17
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.47 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.6  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 453 PVINDDGPSTEKTKGDYCPASERCLEYPTSNFDTMIHLLKGNIGTGILAMPDA 611
           PV N D  ++E +   Y P  + C  +     D +  L +G + T +L   D+
Sbjct: 45  PVSNSDSENSEVSSNSYTPKIKSCRPFKAYIKDPLT-LAQGLVSTEMLLKKDS 96


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 556 IVSKFDVGYSKHLSDAGQ 503
           +VSKF  G+S+  S+ G+
Sbjct: 106 VVSKFRAGFSECASEVGR 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,629
Number of Sequences: 336
Number of extensions: 3048
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)