Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e17
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    47   2e-06
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    38   0.001
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    31   0.22 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   2.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   3.6  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   6.3  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = +3

Query: 540 SNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQ 698
           SN   ++ LLK  +GTG+L +P AFK  GL+F     LI+G +   C  +L+Q
Sbjct: 276 SNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQ 328


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 546 FDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHC-MXILVQCSHEL 713
           F ++I+L    +G GIL++P+AF   GL+FG   T++  A  +   +  + QC+  L
Sbjct: 22  FSSVINLANTILGAGILSLPNAFTKTGLLFGCL-TIVFSAFASFLGLYFVSQCAARL 77


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 253 NY*SRD*EKYM*INAVLLRIRLAYIQYISPKNIGNTLLREHNINKSIFCWN*S*FYYY 80
           N  SR  E+++  N V +R   A + Y++P+N    L  +H +NK    W+    +YY
Sbjct: 822 NIGSRLDERFIDANGVAIRDFSAELTYLTPENSKGKLSIDHFLNKVQSRWHDEEHHYY 879


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 477 KDHHHLSLVRLIVFQLHFLDC 415
           +D+ H  LVR+ +F +H+L C
Sbjct: 471 EDNEHSGLVRICLFIVHYLSC 491


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 342 LLHKNVKIKLKAMSDEKQPLLTGPNSPENVIEIQSTEPVINDDGPSTEKTKGDYCPA 512
           ++H N K   K ++  K  +    NS  NV+E         D+ P TE+   ++ PA
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTTEDADEEPETEENLDEFKPA 330


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = -2

Query: 196 IRLAYIQYISPKNIGNTLLREHNINKSIFCWN*S*FYYYILRAIVHDFSSLI 41
           I +++  YI  +N+G  L+R  +  KSI C   + F Y ILR+ +  F++L+
Sbjct: 185 INVSFFNYIF-QNLG-WLIR-FSFRKSIICCLFTPFSYAILRSYIWRFAALL 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,886
Number of Sequences: 5004
Number of extensions: 49803
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)