Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e17
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 42 7e-04
04_04_0819 - 28312667-28313219,28315157-28316430 40 0.002
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 40 0.002
02_01_0681 - 5059082-5059217,5059318-5059783,5059869-5060072,506... 39 0.003
06_03_0842 + 25307509-25308049,25308507-25308659,25308770-253089... 38 0.006
02_05_0264 + 27263562-27264830 36 0.033
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106... 33 0.30
06_03_0915 - 25929433-25930893 31 0.70
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809... 29 2.8
01_05_0586 + 23443371-23444645 28 6.5
12_01_0396 - 3128047-3128273,3128350-3128632,3128717-3128874,312... 28 8.6
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 28 8.6
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 28 8.6
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 28 8.6
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 552 TMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
T+ +++ +GTG+L +P AF+ AG + G G +CM +LV C +L
Sbjct: 33 TLGNVVVSIVGTGVLGLPYAFRTAGWVAGSLGVAAAGCATLYCMLLLVDCRDKL 86
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 579 IGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
+G+G+L +P F G + G L + A+ HCM +LV C L
Sbjct: 49 VGSGVLGLPYTFSRTGWVAGSVLLLAVAALTFHCMMLLVACRRRL 93
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +3
Query: 552 TMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
T+ +++ +GTG+L +P AF+ +G + G GA +CM +L+ C +L
Sbjct: 21 TLGNIVVSIVGTGVLGLPYAFRTSGWLAGALGVAGAGAATFYCMLLLLDCRDKL 74
>02_01_0681 -
5059082-5059217,5059318-5059783,5059869-5060072,
5060163-5060315,5060849-5061269
Length = 459
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 579 IGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHE 710
+G GI+A+P + K G+I G+ +++ + + +LV+CSHE
Sbjct: 56 VGAGIMALPASIKMLGIIPGILMIILVALLTEASIDMLVRCSHE 99
>06_03_0842 +
25307509-25308049,25308507-25308659,25308770-25308973,
25309056-25309521,25309614-25309746
Length = 498
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 579 IGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHE 710
+G GI+A+P + K G+I G+ +++ + + +LV+CSH+
Sbjct: 96 VGAGIMALPASIKMLGIIPGILMIIVVALLTEASIDMLVRCSHQ 139
>02_05_0264 + 27263562-27264830
Length = 422
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 579 IGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
+G G+L +P F G G L + A+ +CM +LV C L
Sbjct: 47 VGAGVLGLPYTFSRTGWAAGSILLLSVAALTFYCMMLLVACRRRL 91
>04_04_0338 +
24509698-24510042,24510373-24510490,24510539-24510642,
24510823-24511491
Length = 411
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 561 HLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQC 701
H++ IG+G+L++ G + G L+ GA+ C +LV+C
Sbjct: 42 HIITAVIGSGVLSLAWGVAQLGWVAGPAVMLLFGAVIYCCSVLLVEC 88
>06_03_0915 - 25929433-25930893
Length = 486
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 555 MIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQ 698
+ +L IG GI+A+P K G+ G+ L+MG + + +LV+
Sbjct: 80 VFNLATSIIGAGIMALPATMKVLGVAVGLVSILVMGILSEVTIELLVR 127
>02_05_0601 -
30278455-30278572,30280211-30280676,30280748-30280951,
30281065-30281220,30281336-30281738
Length = 448
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/88 (23%), Positives = 40/88 (45%)
Frame = +3
Query: 441 QSTEPVINDDGPSTEKTKGDYCPASERCLEYPTSNFDTMIHLLKGNIGTGILAMPDAFKN 620
+ +EP++ P ++ GD AS S + +L +G GI+A+P K
Sbjct: 8 EGSEPLL----PRKQRDGGDDGAASSHDHFDGASFSGAVFNLSTTIVGAGIMALPATMKV 63
Query: 621 AGLIFGVFCTLIMGAMCTHCMXILVQCS 704
GL+ G+ ++ + + +LV+ S
Sbjct: 64 LGLVPGLILVMLAAVLTDASIELLVRFS 91
>01_05_0586 + 23443371-23444645
Length = 424
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 552 TMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQC 701
T ++L G G+L+MP A G + + +++GA+C + ++ +C
Sbjct: 42 TCLNLTNAVSGIGVLSMPYAVSQGGWL-SLLLFVLVGAVCYYTGTLIERC 90
>12_01_0396 -
3128047-3128273,3128350-3128632,3128717-3128874,
3129097-3129314,3129682-3129912,3130630-3130691
Length = 392
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 538 VGYSKHLSDAGQ*SPFVFSVEGPSSFITGSVDCISITFSGLFGPVRSGCFSSL-IAFNL 365
V K++S+ GQ P + +TG+VD S L P SGCF S+ FNL
Sbjct: 272 VSLVKNMSEDGQ-QPVSCMLRKGEFLLTGNVDVASHVDLWLRFPDPSGCFKSVEFPFNL 329
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +3
Query: 420 PENVIEIQSTEPVINDDGPSTEKTKGDYCPASERCLEYPTSNFDTMIHLLKGNIG 584
P +E + TEP + P E P ++ LE PT + H + ++G
Sbjct: 442 PSEELETRETEPCHKHNSPVHESENQQDSPMTDIFLENPTKLYSNRSHYNESDMG 496
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 546 SLMLDILNTFLMQGNSRLLFSQLKDHHHLSLVRLIVFQLHFL 421
S++LDI+N +Q +L D H + ++R +V L FL
Sbjct: 1789 SVLLDIINKNGLQMLHNILKQNKSDFHRIPIIRKLVKVLEFL 1830
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +3
Query: 342 LLHKNVKIKLKAMSDEKQPLLTGPNSPENVIEIQSTEPVINDDGPSTEKTKGDYCPASER 521
L K K++ KA+ Q + P++ E+ + + + V D T YCP +
Sbjct: 101 LTQKASKMEFKAIESVLQTI--NPHTGEDFLVVNTVPMVAYKDVHYFPCTL--YCPCQKV 156
Query: 522 CLEYPTSNFDTMIHLLKG 575
CL Y ++ D I L G
Sbjct: 157 CLSYRCADMDREIPALMG 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,547
Number of Sequences: 37544
Number of extensions: 264005
Number of successful extensions: 628
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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