Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e17
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              48   8e-06
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)              38   0.006
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)                 31   0.95 
SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)           30   1.7  
SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)           30   2.2  
SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              28   6.7  
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.7  
SB_46360| Best HMM Match : EGF (HMM E-Value=0)                         28   8.8  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          28   8.8  

>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +3

Query: 519 RCLEYPTS--NFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXIL 692
           +CL  PT+   F    ++LK  IGT  LA+P AFK +GL  G+   +++  +  HC  ++
Sbjct: 376 KCLR-PTAWQQFTDFANVLKAFIGTSYLALPFAFKQSGLALGIVALVLIATITDHCCQMI 434

Query: 693 VQC 701
           ++C
Sbjct: 435 IKC 437


>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = +3

Query: 525 LEYPTSNFDTMIHLLKGNIGTGILAMPDAFKNAGLI 632
           L+ PTS + T+ H+LK NIG G+L++P A  NAG++
Sbjct: 69  LKNPTSEWQTLTHILKANIGPGMLSLPAAMMNAGIV 104


>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 528 EYPTSNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSH 707
           E  T +F    ++   N+GTGILAMP   +  G  +GV   +++  +  +   IL+ C H
Sbjct: 23  ENETHSFQAFFNIFNANMGTGILAMPYVIRLTG-YWGVAIVILVALLGNYTGKILIHCLH 81

Query: 708 E 710
           E
Sbjct: 82  E 82


>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
          Length = 332

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
 Frame = +3

Query: 339 CLLHKNVKIKLKAMSDEK-QPLLTGP--NSPENVIEIQSTEP------VINDDGPSTEKT 491
           C  +  V++ L  ++  K +P+LT       E V +++            +DDG S+ K 
Sbjct: 19  CPANDCVRVVLAVLASHKLEPVLTANLGRMAEEVTQLEGNSEQSSLITASDDDGSSSGKK 78

Query: 492 KGDYCPASERC---------LEYPTSNFDTMIHLLKGNIGTGILAMPDAFKNAGLI 632
             +  P SE           +   T++F +++HL+KG +G G+  MP A   AGL+
Sbjct: 79  SWELQPVSEYSTMDLDRSMFMSNTTTSFTSLMHLIKGCVGIGVYGMPLAVAYAGLL 134


>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
          Length = 385

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 582 GTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQ 698
           G GILA+P +   AG+I G  C  I+  M       L++
Sbjct: 27  GVGILALPSSIAKAGIISGSICLTIVAFMAFVSATFLIE 65


>SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
          Length = 163

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 489 TKGDYCPASERCLEYPTSNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAM 668
           ++G     S+  L   +S +   ++ +    GTG LA+P A    GL  G      +G +
Sbjct: 3   SRGSPTLKSKEDLRNRSSTWRVTMNTINYMEGTGFLALPYAVARGGLA-GALSFAFVGIL 61

Query: 669 CTHCMXILVQCSHE 710
             +   +L++C +E
Sbjct: 62  MAYTSYLLIECVYE 75


>SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 582 GTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHE 710
           GTG LA+P A    GL  G      +G +  +   +L++C +E
Sbjct: 49  GTGFLALPYAVSRGGLA-GALSFAFVGILMAYTSYLLIECVYE 90


>SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
          Length = 178

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 582 GTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHE 710
           GTG LA+P A    GL  G      +G +  +   +L++C +E
Sbjct: 49  GTGFLALPYAVARGGLA-GALSFAFVGILMAYTSYLLIECVYE 90


>SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 582 GTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHE 710
           GTG LA+P A    GL  G      +G +  +   +L++C +E
Sbjct: 49  GTGFLALPYAVARGGLA-GALSFAFVGILMAYTSYLLIECVYE 90


>SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 582 GTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHE 710
           GTG LA+P A    GL  G      +G +  +   +L++C +E
Sbjct: 3   GTGFLALPYAVARGGLA-GALSFAFVGILMAYTSYLLIECVYE 44


>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 549 QSLMLDILNTFLMQGNSRLLFSQLKDHHHLSLVRLIVFQLHFLDCLVQLGVAVF 388
           ++L  D+L+   + GNS +L+   K  H    + L V  L   D L+ + +A F
Sbjct: 571 ETLTFDVLHVIGLVGNSLVLWIVNKKRHQRKTINLFVGALAVSDLLLIVNLACF 624


>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 324 KINEKCLLHKNVKIKLKAMSDEKQPLLTGPNSPENVIEIQSTEPVI 461
           K+N  C+      ++    S   QP +TG + P N    Q   P I
Sbjct: 220 KVNFSCVFDNVTGVEPPRQSSTPQPKITGTSQPSNPTATQPQNPAI 265


>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 336 KCLLHKNVKIKLKAMSDEK-QPLLTGPNSPENVIEIQSTEPVIN-DDGPSTE 485
           KC  H+ V+IK  A+ DE+  P L        +  + ST  +   D  P T+
Sbjct: 170 KCPYHRGVRIKRAALKDERTHPPLWDRGGETRLFHVSSTNGIYRIDTEPQTD 221


>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = +3

Query: 357 VKIKLKAMSDEKQPLLTGPNSPENVIE--IQSTEPVINDDGP---STEKTKGDYCPASER 521
           V   ++ +S+  +PL   P  P N+ E    STEP+ N   P    TE       P S  
Sbjct: 739 VSNNIEPVSNSTEPLSNSPEPPPNITEPLSNSTEPLSNITDPLPIITEAVSNSPEPVSNS 798

Query: 522 CLEYPTSN 545
                TSN
Sbjct: 799 TEAVSTSN 806


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 712 SS*EHCTNMXMQ*VHIAPIINVQNTPKISPAFL 614
           S+ EHC NM M    ++P++ V   PK +PA L
Sbjct: 460 STYEHCHNMKMMKFSVSPVVRVAVEPK-NPADL 491


>SB_46360| Best HMM Match : EGF (HMM E-Value=0)
          Length = 352

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 639 VFCTLIMGAMCTHCMXILVQCSHELCI 719
           VFC   MG   THC   +  CS + C+
Sbjct: 296 VFCKCAMGFTGTHCEKDIDDCSSDPCV 322


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 639  VFCTLIMGAMCTHCMXILVQCSHELCI 719
            VFC   MG   THC   +  CS + C+
Sbjct: 1109 VFCKCAMGFTGTHCEKDIDDCSSDPCV 1135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,290
Number of Sequences: 59808
Number of extensions: 331910
Number of successful extensions: 711
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)