Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e17
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11900.1 68416.m01459 amino acid transporter family protein l...    49   4e-06
At2g42005.1 68415.m05196 amino acid transporter family protein l...    45   4e-05
At4g38250.1 68417.m05402 amino acid transporter family protein l...    44   1e-04
At5g65990.1 68418.m08308 amino acid transporter family protein s...    36   0.021
At1g80510.1 68414.m09435 amino acid transporter family protein s...    32   0.44 
At1g51780.1 68414.m05835 IAA-amino acid hydrolase 5 / auxin conj...    31   0.58 
At1g33800.1 68414.m04178 expressed protein contains Pfam profile...    29   2.4  
At5g41800.1 68418.m05089 amino acid transporter family protein s...    29   4.1  
At5g38820.1 68418.m04695 amino acid transporter family protein l...    29   4.1  
At5g52660.2 68418.m06538 myb family transcription factor contain...    28   7.2  
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    28   7.2  
At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogen...    28   7.2  

>At3g11900.1 68416.m01459 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 432

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 507 PASERCLEYPTSNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMX 686
           P SE      TS   T+ +++   +GTG+L +P AF+ AG + G    +I+G    +CM 
Sbjct: 21  PPSETTGGDRTSALQTLGNIIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFATYYCML 80

Query: 687 ILVQCSHEL 713
           +L+QC  +L
Sbjct: 81  LLIQCRDKL 89


>At2g42005.1 68415.m05196 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 413

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 537 TSNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
           +S F T  ++    +G G+L +P AFK  G + G+     + A+  HCM +LV    +L
Sbjct: 23  SSKFKTFANVFIAIVGAGVLGLPYAFKRTGWLMGLLTLFSVAALINHCMMLLVHIRRKL 81


>At4g38250.1 68417.m05402 amino acid transporter family protein low
           similarity to lysosomal amino acid transporter 1 [Rattus
           norvegicus] GI:14571904; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 436

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 537 TSNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
           +S F T  ++    +G G+L +P AFK  G + GV   + +  +  HCM +LV    +L
Sbjct: 34  SSQFKTFANVFIAVVGAGVLGLPYAFKRTGWLMGVLLLVSVSVLTHHCMMLLVYTRRKL 92


>At5g65990.1 68418.m08308 amino acid transporter family protein
           similar to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 427

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 579 IGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSHEL 713
           +G G+L +P  FK  G + G+   L + ++   CM +LV    +L
Sbjct: 52  VGAGVLGLPYTFKKTGWLLGLLTLLFVSSLTFFCMMLLVHTRRKL 96


>At1g80510.1 68414.m09435 amino acid transporter family protein
           similar to amino acid transporter system N2 [Rattus
           norvegicus] GI:14578932; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 489

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 546 FDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCS 704
           +  + +L    IG GI+A+P   K  GL+ G    ++M  +    + +LV+ S
Sbjct: 78  YGAVFNLTTSIIGAGIMALPATMKVLGLVLGFVLIILMALLSEISVELLVRFS 130


>At1g51780.1 68414.m05835 IAA-amino acid hydrolase 5 / auxin
           conjugate hydrolase (ILL5) identical to auxin conjugate
           hydrolase ILL5 [Arabidopsis thaliana]
           gi|5725649|gb|AAD48152; contains nonconsensus AT
           acceptor splice site at exon3
          Length = 435

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 303 RVVTPMFYEINKHKIIQIISLEIEKNICKLTLYY*ESDWPIF 178
           R + P  +E  K +I+Q+I+ +   N+C  T+ + E + P F
Sbjct: 290 RALLPKSFEQLKQRIVQVITTQASVNMCNATVDFLEDETPPF 331


>At1g33800.1 68414.m04178 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 297

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 432 IEIQSTEPVINDD-GPSTEKT--KGDYCPASERCLEYPTSNFDTMIHLLKGNI 581
           I   S++P+   +     E+T  K + CP +++C + P S  D ++H +  N+
Sbjct: 33  ISSSSSKPISKTNLSQEEEETQHKQEGCPTTQQCTKMPLSLSDALVHYVTSNV 85


>At5g41800.1 68418.m05089 amino acid transporter family protein
           similar to amino acid permease 1 [Nicotiana sylvestris]
           GI:976402; belongs to INTERPRO:IPR002422 amino
           acid/polyamine transporter, family II
          Length = 452

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 561 HLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXIL 692
           HL    +G  IL +P AF+  G   G  C   MG +  +   ++
Sbjct: 37  HLTTAIVGPTILTLPYAFRGLGWWLGFVCLTTMGLVTFYAYYLM 80


>At5g38820.1 68418.m04695 amino acid transporter family protein low
           similarity to N system amino acids transporter NAT-1
           [Mus musculus] GI:7406950; contains Pfam profile
           PF01490: Transmembrane amino acid transporter protein
          Length = 456

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 579 IGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMXILVQCSH 707
           IG GI+A+P   K  GLI G+   ++M  +    +  L++ S+
Sbjct: 49  IGAGIMALPATMKILGLIPGITIIVLMAFLTDASIEFLLRFSN 91


>At5g52660.2 68418.m06538 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA-binding domain
          Length = 331

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/82 (24%), Positives = 31/82 (37%)
 Frame = +3

Query: 399 LLTGPNSPENVIEIQSTEPVINDDGPSTEKTKGDYCPASERCLEYPTSNFDTMIHLLKGN 578
           L+T P +        + + +     P       + C +S      P SN D   H   GN
Sbjct: 179 LMTSPTTAAAAPWTNNAQTISFTPLPKAGAGANNNCSSSSENTPRPRSNRDARDH---GN 235

Query: 579 IGTGILAMPDAFKNAGLIFGVF 644
           +G  +  +PD  +  G I  VF
Sbjct: 236 VGHSLRVLPDFAQVYGFIGSVF 257


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -3

Query: 510 QGNSRLLFSQLKDHHHLSLVRLIVFQLHFLDCLVQLGVAVFH 385
           +G++    S+  + H+L+  R+++F LHF D L+    ++FH
Sbjct: 820 RGSTSRKRSRAAEMHNLA-ERVVIFPLHFQDSLISTMDSLFH 860


>At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           zeta-crystallin / quinone reductase (NADPH) - Mus
           musculus, PIR:A54932; contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 348

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 396 PLLTGPNSPENVIEIQSTEPV--INDD 470
           P  T P SPE+ +E+  T P+  +N D
Sbjct: 12  PTATNPGSPESPVEVSKTHPIPSLNSD 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,549,685
Number of Sequences: 28952
Number of extensions: 236493
Number of successful extensions: 551
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)