Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e16
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 39 0.004
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 38 0.006
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 38 0.008
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 37 0.019
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 37 0.019
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 37 0.019
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 36 0.025
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 36 0.025
SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5) 36 0.025
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 36 0.025
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 36 0.043
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 35 0.057
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.076
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 35 0.076
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.076
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.076
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 35 0.076
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 34 0.10
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 34 0.10
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 34 0.10
SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5) 34 0.10
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 34 0.10
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 34 0.10
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.10
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 34 0.10
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 34 0.10
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 34 0.10
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.10
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 33 0.23
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7) 31 0.71
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 31 0.71
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 31 0.71
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 31 0.71
SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) 31 1.2
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 31 1.2
SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9) 29 3.8
SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 5.0
SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 28 6.6
SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.6
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 6.6
SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_378| Best HMM Match : TTL (HMM E-Value=1.8) 28 6.6
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15) 28 8.7
SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 28 8.7
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 28 8.7
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 551 RHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFK 703
R R HP PL +S+ SF RTI WN LP+ +F E + FK
Sbjct: 823 RKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNEPCSLPIFK 873
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 491 YKAIS*KYMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
Y I YM+ R+ R R YY + L+++T+ F SF R IR+WN LP+ V
Sbjct: 228 YNFIIVLYMLNLPDLVTRSTRSTRRKELYYNQ-LQANTLAFNYSFFARAIRIWNLLPNDV 286
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
SR H L+++ + F SF PRTIR WN LP+ V D+ FK L
Sbjct: 1627 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1676
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
SR H L+++ + F SF PRTIR WN LP+ V D+ FK L
Sbjct: 1073 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1122
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 569 HPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H + L + T ++ SFLPR +RLWN LP +V R F GL
Sbjct: 184 HSEFYTILNARTDIYKYSFLPRALRLWNNLPQSVIDMRGCPEAFHSGL 231
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
+R H + L+S+ + + SF PR IR+WN LPS V
Sbjct: 122 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 158
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 557 RSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
R++ +Y P + T ++ SFLPR +RLWN LP +V R F GL
Sbjct: 182 RTQHSEFYTIP-NARTDIYKYSFLPRALRLWNNLPQSVIDMRGCPEAFHAGL 232
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
+R H + L+S+ + + SF PR IR+WN LPS V
Sbjct: 441 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
+R H + L+S+ + + SF PR IR+WN LPS V
Sbjct: 1427 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
+R H + L+S+ + + SF PR IR+WN LPS V
Sbjct: 387 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNV 423
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 557 RSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
RSR + ++S+ + SF PRTIR WN LPS V
Sbjct: 177 RSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 214
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +2
Query: 518 IPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERY 685
+P S R HP + + + T F+ SF+PR IRLWN L TV Y
Sbjct: 713 LPLSTLSKPLRRSERTSHPEHYDIPYARTNIFKYSFVPRAIRLWNSLEVTVVLAAY 768
>SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5)
Length = 210
Score = 36.3 bits (80), Expect = 0.025
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 542 RTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
R+ R R YY + L+++T+ F SF R IR+WN LP+ V
Sbjct: 140 RSTRSTRRKELYYNQ-LQANTLAFNYSFFARAIRIWNLLPNDV 181
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 36.3 bits (80), Expect = 0.025
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 542 RTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
R+ R R YY + L+++T+ F SF R IR+WN LP+ V
Sbjct: 294 RSTRSTRRKELYYNQ-LQANTLAFNYSFFARAIRIWNLLPNDV 335
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 36.3 bits (80), Expect = 0.025
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 542 RTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
R+ R R YY + L+++T+ F SF R IR+WN LP+ V
Sbjct: 500 RSTRSTRRKELYYNQ-LQANTLAFNYSFFARAIRIWNLLPNDV 541
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
+R H + L S+ + F SF PR IR WN LP +
Sbjct: 262 TRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLPDNI 298
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 627 CHVPSGYGMSSPPRCFLSAMTCPSSNEAC 713
C P GY + +P RC LS +C SS AC
Sbjct: 2147 CSCPQGYRLENPYRCVLSNASCASSEFAC 2175
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 591 CGHPQCVSRDLFCHVPSGYGMSSPPRCFLSAMTCPSSNEAC 713
C +C+SRD C + G SS + +TCP+ C
Sbjct: 3053 CPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARC 3093
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 34.7 bits (76), Expect = 0.076
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFK 703
SR + ++S+ + SF PRTIR WN LPS V E + FK
Sbjct: 853 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 899
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 34.7 bits (76), Expect = 0.076
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFK 703
SR + ++S+ + SF PRTIR WN LPS V E + FK
Sbjct: 133 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 179
>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +2
Query: 491 YKAIS*KYMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELP 661
YKA++ K + R R HP L T F+ SF RTI+ WN+LP
Sbjct: 328 YKAVNKKSALKIPDNIDRRTRQLRSSHPDKFIELCPRTEAFKNSFFCRTIKEWNKLP 384
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 34.7 bits (76), Expect = 0.076
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFK 703
SR + ++S+ + SF PRTIR WN LPS V E + FK
Sbjct: 544 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 590
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 34.7 bits (76), Expect = 0.076
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFK 703
SR + ++S+ + SF PRTIR WN LPS V E + FK
Sbjct: 772 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVI-ESSSIDSFK 818
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R S YY E +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 110 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 165
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R S YY E +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 311 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 366
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R S YY E +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 297 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 352
>SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)
Length = 294
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 491 YKAIS*KYMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELP 661
YKA++ K + R R HP L +T ++ SF RTI+ WN+LP
Sbjct: 219 YKAVNKKSALEIPDNIDRRTRQLRSSHPDKFIELCPTTEAYKNSFFCRTIKEWNKLP 275
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 578 YLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
Y L+++T+ F SF R IR+WN LP+ V
Sbjct: 1221 YCNQLQANTLTFNYSFFARAIRIWNLLPNDV 1251
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
SR + ++S+ + SF PRTIR WN LPS V
Sbjct: 178 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 214
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R S YY E +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 517 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 572
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
SR + ++S+ + SF PRTIR WN LPS V
Sbjct: 440 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 476
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R S YY E +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 214 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELDSIEHFKRDL 269
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
SR + ++S+ + SF PRTIR WN LPS V
Sbjct: 87 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 123
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R S YY E +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 602 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 657
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 524 ASRFYHRTARHRSR-VHPYYLEPLRSSTVRFQR-SFLPRTIRLWNELPS 664
AS T+R+ +R HP + + R S+ PRT++LWN LPS
Sbjct: 715 ASLLSPATSRYNTRSYHPNNYRLFSTHNQNYYRNSYFPRTVKLWNSLPS 763
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 524 ASRFYHRTARHRSR-VHPYYLEPLRSSTVRFQR-SFLPRTIRLWNELPS 664
AS T+R+ +R HP + + R S+ PRT++LWN LPS
Sbjct: 218 ASLLSPATSRYNTRSYHPNNYRLFSTHNQNYYRNSYFPRTVKLWNSLPS 266
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTV 670
SR + ++S+ + SF PRTIR WN LP+ V
Sbjct: 219 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPAQV 255
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 539 HRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 712
H+ R R+ H + +++ ++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 760 HQDLRTRNS-HNFKCYQEKATKNKYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 815
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 560 SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFP 676
S + Y L + F SF RTI +WN LP VFP
Sbjct: 809 SACNSYQFSLLPAKINAFLFSFYSRTIPVWNALPQAVFP 847
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.9 bits (69), Expect = 0.53
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 611 FQRSFLPRTIRLWNELPS 664
++ S+ PRT++LWN LPS
Sbjct: 249 YRNSYFPRTVKLWNSLPS 266
>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
Length = 282
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWNELPSTV 670
L+S+ + + SF R IR+WN LPS V
Sbjct: 227 LQSNILSYNYSFFARAIRIWNLLPSNV 253
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 569 HPYYLEPLRSSTVRFQRSFLPRTIRLWNELP-STV 670
HP + T F+ SF P IR+WN LP ST+
Sbjct: 616 HPQRFALVSCKTNVFKESFFPHAIRMWNGLPVSTI 650
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 569 HPYYLEPLRSSTVRFQRSFLPRTIRLWNELP-STV 670
HP + T F+ SF P IR+WN LP ST+
Sbjct: 198 HPQRFALVSCKTNVFKESFFPHAIRMWNGLPVSTI 232
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 539 HRTARHR-SRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPS 664
H+ R R S YY E +++ ++ SF PRTIR WN LP+
Sbjct: 543 HQDLRTRNSHNFKYYQE--KATKNKYFYSFFPRTIRHWNTLPN 583
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 491 YKAIS*KYMIPA-SRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELP 661
YKA++ K + RT + RS + ++E L T ++ SF RTI+ WN+LP
Sbjct: 625 YKAVNKKSALKIPDNIDRRTRQLRSSLPDKFIE-LCPRTEAYKNSFFCRTIKEWNKLP 681
>SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)
Length = 218
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 22 EVTDAYSKKCSCNREKATVFCRSCGFYCNGRIRLKCQQHPRVTFLLDISE-CPKC 183
+V DA +KC CN KA+ C S G++C+ + C++ ++L+ + CP C
Sbjct: 98 DVKDAACQKCECNSGKAS-SC-SIGYHCDALLDGACEK-----YVLEPKQCCPTC 145
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Frame = +1
Query: 40 SKKCSCNREKATVFC--------RSCGFYCNGRIRLKCQQHPRVT 150
+ CSC +KA C RSCG C+ + C QH +VT
Sbjct: 841 ASSCSCMCDKAPEVCPVGKYWSQRSCGCVCSAHVVGACNQHGKVT 885
>SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9)
Length = 159
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 461 KSLLGNLFTSYKAIS*KYMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTI 640
+ L+ L YK + IP R R Y + L+++ F SF+PRTI
Sbjct: 62 RRLMLQLSMFYKIKNNIVKIPFPTSIQENTRTSRRTDISYRQ-LQANVNAFGMSFIPRTI 120
Query: 641 RLWN 652
R WN
Sbjct: 121 RTWN 124
>SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFDMSFIPRTIRTWN 124
>SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 461 KSLLGNLFTSYKAIS*KYMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTI 640
+ L+ L YK + IP R R Y + L+++ F SF+PRTI
Sbjct: 62 RRLMLQLSMFYKIKNNIVKIPFPTSIQENTRTSRRTDISYRQ-LQANVNAFGMSFIPRTI 120
Query: 641 RLWN 652
R WN
Sbjct: 121 RTWN 124
>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 570 IHTTWSHCGHPQCVSRDLFCHVPSGYGMSSPPRCFLSAMTCPSSNEACG 716
IH+T CG PQC C + S P+C + + C + CG
Sbjct: 425 IHST--QCGSPQCGIHSTQCGIHSTQCGIHSPQCGIHSPQCGIHSTQCG 471
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 37 YSKKCSCNREKATVFCRSCGFYCNGRIRLKCQQHP--RVTFLLDISECPKCHSSVFLD-- 204
YS C++ C + + G++ +C+++ + L D ECP C++ + D
Sbjct: 1075 YSNTSVCDQTTGQCSCNAT-LHIGGQLCDRCEENAYNKSDSLFDCHECPSCYAYIQTDVR 1133
Query: 205 EYKTGPS*LQQVSITI 252
+ +T + LQ ++ TI
Sbjct: 1134 QIRTVVARLQALTYTI 1149
>SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 398 LQANVNAFGMSFIPRTIRTWN 418
>SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 467 LQANVNAFGMSFIPRTIRTWN 487
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 208 LQANVNAFGMSFIPRTIRTWN 228
>SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 837 LQANVNAFGMSFIPRTIRTWN 857
>SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 442 LQANVNAFGMSFIPRTIRTWN 462
>SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 590 LRSSTVRFQRSFLPRTIRLWN 652
L+++ F SF+PRTIR WN
Sbjct: 55 LQANVNAFGMSFIPRTIRTWN 75
>SB_378| Best HMM Match : TTL (HMM E-Value=1.8)
Length = 327
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 361 NQKSQLSIDNK*LKFIQSA-IFLT*QYIFIVLSIKKFTWQFVYI 489
NQK +S+ + F++ A IFL YI ++L+ ++FTW F I
Sbjct: 66 NQKLDMSLLDVISSFLEDAPIFLLQTYI-VLLTRREFTWTFAEI 108
>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
Length = 582
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 160 DISECPKCHSSVFLDE 207
DI CP+CHS+V DE
Sbjct: 405 DIYYCPRCHSAVVADE 420
>SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 226
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = +1
Query: 64 EKATVFCRSCGFYCNGRIRL-----KCQQHPR 144
+ + + CRSCG C RIRL KCQ+ R
Sbjct: 195 QTSVLVCRSCGRTCASRIRLFSHGKKCQRSSR 226
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 587 APGSMDELYSGGGRCDGKNEMPVS 516
AP S+++ GGG C G+N +PV+
Sbjct: 770 APTSLEDFKWGGGPCLGENGVPVN 793
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,611,576
Number of Sequences: 59808
Number of extensions: 509392
Number of successful extensions: 1478
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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