Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e16
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    29   3.1  
At5g59600.1 68418.m07468 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At1g45976.1 68414.m05206 expressed protein                             27   9.4  

>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 22  EVTDAYSKKCSCNREKATVFCRSCGFYCNGRIR 120
           E+  A  KKCS    +  + C+ CG Y NG ++
Sbjct: 147 ELAKAVVKKCSTMASQRIITCKKCG-YLNGMVK 178


>At5g59600.1 68418.m07468 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 534

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 235 VAVKMVLFYIHPGIQMNGILDILKCLTERSLEDVAGISIEYVRCNRN 95
           +A K+V FY+  G     +LD  K   E    D++G  +    C RN
Sbjct: 53  IAAKLVTFYVECG----KVLDARKVFDEMPKRDISGCVVMIGACARN 95


>At1g45976.1 68414.m05206 expressed protein
          Length = 325

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = +1

Query: 7   GRGVPEVTDAYS----KKCSCNREKATVFCRSCGFYCNGRIRLKCQQHPRVTFLLD--IS 168
           G G  EV D  S    +  S N  K  + CR CG      + L C  H  +    +  +S
Sbjct: 250 GCGDSEVDDTASCFNGRDNSNNNTKTMMMCRFCGVREMCMLLLPCN-HMCLCKECERKLS 308

Query: 169 ECPKCHSSVFL 201
            CP C SS FL
Sbjct: 309 SCPLCQSSKFL 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,821
Number of Sequences: 28952
Number of extensions: 352718
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)