Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e14
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0002 - 11387119-11387780,11388756-11388954,11389033-113891... 28 3.7
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817... 28 5.0
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789... 28 5.0
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 28 5.0
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854 28 5.0
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 27 6.5
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 27 8.7
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 8.7
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 27 8.7
>09_03_0002 -
11387119-11387780,11388756-11388954,11389033-11389106,
11389840-11390323,11390439-11390450
Length = 476
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 366 MNFIKNKFRSRLTGEYL 316
MN++KNK R+R+ EYL
Sbjct: 425 MNYVKNKLRNRMGNEYL 441
>11_06_0248 +
21680237-21680392,21680450-21681141,21681397-21681724,
21681945-21682801,21682928-21683378,21683761-21684066,
21684136-21684456,21684539-21684745,21685568-21685810
Length = 1186
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -3
Query: 341 DLGLLVNISNVTSTDSYGSQPAFLKNGASVLRTVIRFRFL 222
DLG +VN+ N+ T S G QPA LK SVL + + L
Sbjct: 606 DLGKMVNLQNLHMTCSSG-QPANLKLLGSVLNKLKNMKSL 644
>10_08_0075 -
14676835-14677173,14677776-14678426,14678734-14678948,
14679510-14679783,14680249-14680410
Length = 546
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 366 MNFIKNKFRSRLTGEYL 316
MN+IKNK RS++ EYL
Sbjct: 381 MNYIKNKLRSKMGQEYL 397
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 366 MNFIKNKFRSRLTGEYL 316
MN+IKNK RS++ EYL
Sbjct: 728 MNYIKNKLRSKMGQEYL 744
>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
Length = 751
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 366 MNFIKNKFRSRLTGEYL 316
MN+IKNK RS++ EYL
Sbjct: 700 MNYIKNKLRSKMGQEYL 716
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 120 SDDGVNNCGFYNIFNQF 70
S DG +CGFYNI N +
Sbjct: 367 SSDGTFSCGFYNITNAY 383
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 158 ILPRSPYYLPLRCLTMV-LIIVVSTTFL 78
I R PY+LP C++++ L++++S +L
Sbjct: 164 IFGRFPYFLPCLCISLIALVVLISCIWL 191
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 303 YRQLW*PTSLLEERCLRLKNRHSFSFLNVKRRFLNCSKT-ADVNGLRDIYFTSITLLSAP 127
Y L P LEE S SF + ++ + T A V ++D+ + LS+P
Sbjct: 16 YTSLVFPKQYLEELARVPTEVSSSSFFSQLNNLISLTSTYAQVIAVKDLASAFVQFLSSP 75
Query: 126 TMSDDGV 106
+ DD V
Sbjct: 76 AIPDDAV 82
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 158 ILPRSPYYLPLRCLTMVLIIVVSTTF 81
I R PY+LP C++++ I+ + +F
Sbjct: 272 IFGRFPYFLPCLCISLLAIVALLASF 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,928
Number of Sequences: 37544
Number of extensions: 218762
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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