Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e13
(492 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 96 7e-20
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 96 7e-20
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 96 7e-20
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 96 7e-20
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 94 3e-19
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 58 1e-08
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 58 1e-08
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 58 1e-08
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 58 1e-08
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 58 1e-08
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 58 1e-08
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 58 1e-08
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 58 1e-08
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 58 1e-08
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 58 1e-08
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 58 2e-08
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 58 2e-08
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 58 2e-08
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 58 2e-08
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 56 5e-08
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 56 5e-08
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 56 5e-08
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 56 5e-08
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 56 5e-08
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 56 5e-08
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 56 5e-08
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 56 5e-08
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 56 5e-08
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 56 5e-08
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 52 1e-06
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 38 0.025
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 38 0.025
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 38 0.025
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 34 0.23
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 34 0.23
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 34 0.23
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 33 0.54
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 32 0.94
BX119957-19|CAM25923.1| 1041|Homo sapiens DEAD/H (Asp-Glu-Ala-As... 32 1.2
BX119957-18|CAM25922.1| 560|Homo sapiens DEAD/H (Asp-Glu-Ala-As... 32 1.2
BC009392-1|AAH09392.1| 1042|Homo sapiens DEAH (Asp-Glu-Ala-His) ... 32 1.2
BC008825-1|AAH08825.1| 1042|Homo sapiens DEAH (Asp-Glu-Ala-His) ... 32 1.2
BA000025-72|BAB63323.1| 1041|Homo sapiens RNA helicase protein. 32 1.2
AL845353-14|CAI41883.1| 1041|Homo sapiens DEAD/H (Asp-Glu-Ala-As... 32 1.2
AL845353-13|CAI41882.1| 560|Homo sapiens DEAD/H (Asp-Glu-Ala-As... 32 1.2
AL732442-12|CAI17762.1| 1041|Homo sapiens DEAH (Asp-Glu-Ala-His)... 32 1.2
AL732442-11|CAI17761.1| 560|Homo sapiens DEAH (Asp-Glu-Ala-His)... 32 1.2
AL662798-3|CAI18248.1| 1041|Homo sapiens DEAH (Asp-Glu-Ala-His) ... 32 1.2
AL662798-2|CAI18247.1| 560|Homo sapiens DEAH (Asp-Glu-Ala-His) ... 32 1.2
AB202095-1|BAE78615.1| 1041|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp... 32 1.2
AB103604-1|BAF31265.1| 1041|Homo sapiens DBP2 protein protein. 32 1.2
AB088098-1|BAC54930.1| 1041|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp... 32 1.2
AB011149-1|BAA25503.2| 1043|Homo sapiens KIAA0577 protein protein. 32 1.2
AB001601-1|BAA25908.1| 1041|Homo sapiens ATP-dependent RNA helic... 32 1.2
S80343-1|AAB35627.1| 659|Homo sapiens arginyl-tRNA synthetase p... 30 5.0
BT007394-1|AAP36058.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 5.0
BC014619-1|AAH14619.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 5.0
BC000528-1|AAH00528.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 5.0
AK222797-1|BAD96517.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 5.0
AF283342-1|AAL38107.1| 881|Homo sapiens candidate tumor suppres... 29 6.6
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein... 29 6.6
AC068287-1|AAY24318.1| 223|Homo sapiens unknown protein. 29 6.6
BC054492-1|AAH54492.1| 997|Homo sapiens RABGAP1 protein protein. 29 8.8
AL365338-3|CAH70298.1| 997|Homo sapiens RAB GTPase activating p... 29 8.8
AK131449-1|BAD18594.1| 599|Homo sapiens d) (GAPCENA). protein. 29 8.8
AJ011679-1|CAB40267.2| 997|Homo sapiens Rab6 GTPase activating ... 29 8.8
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 29 8.8
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 95.9 bits (228), Expect = 7e-20
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +1
Query: 127 KEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILG 306
++ S+ + E E + +L LN RI MTDGR L+G FLCTDRD NVILG
Sbjct: 20 RQSSSSAGDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILG 79
Query: 307 ACSEYLKNNEG-ETEEPRVLGLVMVPGRHIVSIQI 408
+ E+LK ++ EPRVLGL MVPG HIVSI++
Sbjct: 80 SAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 95.9 bits (228), Expect = 7e-20
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +1
Query: 127 KEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILG 306
++ S+ + E E + +L LN RI MTDGR L+G FLCTDRD NVILG
Sbjct: 20 RQSSSSAGDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILG 79
Query: 307 ACSEYLKNNEG-ETEEPRVLGLVMVPGRHIVSIQI 408
+ E+LK ++ EPRVLGL MVPG HIVSI++
Sbjct: 80 SAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 114
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 95.9 bits (228), Expect = 7e-20
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +1
Query: 127 KEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILG 306
++ S+ + E E + +L LN RI MTDGR L+G FLCTDRD NVILG
Sbjct: 20 RQSSSSAGDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILG 79
Query: 307 ACSEYLKNNEG-ETEEPRVLGLVMVPGRHIVSIQI 408
+ E+LK ++ EPRVLGL MVPG HIVSI++
Sbjct: 80 SAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 95.9 bits (228), Expect = 7e-20
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +1
Query: 127 KEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILG 306
++ S+ + E E + +L LN RI MTDGR L+G FLCTDRD NVILG
Sbjct: 20 RQSSSSAGDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILG 79
Query: 307 ACSEYLKNNEG-ETEEPRVLGLVMVPGRHIVSIQI 408
+ E+LK ++ EPRVLGL MVPG HIVSI++
Sbjct: 80 SAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 93.9 bits (223), Expect = 3e-19
Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = +1
Query: 121 QAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVI 300
+++ + + + E E + +L LN RI MTDGR L+G FLCTDRD NVI
Sbjct: 66 RSERLLHPAQDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVI 125
Query: 301 LGACSEYLKNNEG-ETEEPRVLGLVMVPGRHIVSIQI 408
LG+ E+LK ++ EPRVLGL MVPG HIVSI++
Sbjct: 126 LGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 162
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 58.0 bits (134), Expect = 2e-08
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +1
Query: 199 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRVL 363
K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RVL
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 364 GLVMVPGRHIVSIQIDDTTPSQT 432
GLV++ G ++VS+ ++ P T
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDT 83
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 58.0 bits (134), Expect = 2e-08
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +1
Query: 199 KLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRVL 363
K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RVL
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 364 GLVMVPGRHIVSIQIDDTTPSQT 432
GLV++ G ++VS+ ++ P T
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDT 83
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 57.6 bits (133), Expect = 2e-08
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTP---SQTYY 438
LGLV++ G ++VS+ ++ P SQ +Y
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDVSQNWY 95
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 57.6 bits (133), Expect = 2e-08
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTP---SQTYY 438
LGLV++ G ++VS+ ++ P SQ +Y
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDVSQNWY 95
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
+K+ + ++ + R + DGR+ IG F D+ N+IL C E+ K + E EE RV
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 361 LGLVMVPGRHIVSIQIDDTTPSQT 432
LGLV++ G ++VS+ ++ P T
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDT 90
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +1
Query: 244 DGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRVLGLVMVPGRHIVSIQI 408
DGR+ IG F D+ N+IL C E+ K + E EE RVLGLV++ G ++VS+ +
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
Query: 409 DDTTPSQT 432
+ P T
Sbjct: 61 EGPPPKDT 68
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 37.5 bits (83), Expect = 0.025
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 181 EEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGE---TEE 351
++E L K+++ R++ GR G+ D N++L EY+++ + + TE+
Sbjct: 8 KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
Query: 352 PRVLGLVMVPGRHIVSI 402
R LGLV+ G +V I
Sbjct: 68 TRQLGLVVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 37.5 bits (83), Expect = 0.025
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 181 EEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGE---TEE 351
++E L K+++ R++ GR G+ D N++L EY+++ + + TE+
Sbjct: 8 KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
Query: 352 PRVLGLVMVPGRHIVSI 402
R LGLV+ G +V I
Sbjct: 68 TRQLGLVVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 37.5 bits (83), Expect = 0.025
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 181 EEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGE---TEE 351
++E L K+++ R++ GR G+ D N++L EY+++ + + TE+
Sbjct: 8 KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
Query: 352 PRVLGLVMVPGRHIVSI 402
R LGLV+ G +V I
Sbjct: 68 TRQLGLVVCRGTSVVLI 84
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 34.3 bits (75), Expect = 0.23
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 190 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGL 369
G A L + ++ K + + DGR LIG D+ AN++L E + + + PR G+
Sbjct: 6 GTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR--GI 63
Query: 370 VMVPGRHIVSI-QIDDTTPSQT 432
+V G ++V + +ID S T
Sbjct: 64 FVVRGENVVLLGEIDLEKESDT 85
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 34.3 bits (75), Expect = 0.23
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 190 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGL 369
G A L + ++ K + + DGR LIG D+ AN++L E + + + PR G+
Sbjct: 6 GTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR--GI 63
Query: 370 VMVPGRHIVSI-QIDDTTPSQT 432
+V G ++V + +ID S T
Sbjct: 64 FVVRGENVVLLGEIDLEKESDT 85
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 34.3 bits (75), Expect = 0.23
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 190 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGL 369
G A L + ++ K + + DGR LIG D+ AN++L E + + + PR G+
Sbjct: 6 GTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR--GI 63
Query: 370 VMVPGRHIVSI-QIDDTTPSQT 432
+V G ++V + +ID S T
Sbjct: 64 FVVRGENVVLLGEIDLEKESDT 85
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.54
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 160 SEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEY----LK 327
S VV +K+ + + R + DGRV IG F D+ N+I C E+ LK
Sbjct: 35 SRGTAVVTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLK 94
Query: 328 N-NEGETEEPRVLG 366
N + EE RV G
Sbjct: 95 NAKQPAREEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.94
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 175 VVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEY----LKN-NEG 339
VV +K+ + + R + DGRV IG F D+ N+I C E+ LKN +
Sbjct: 40 VVTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQP 99
Query: 340 ETEEPRVLG 366
EE RV G
Sbjct: 100 AREEKRVSG 108
>BX119957-19|CAM25923.1| 1041|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 16 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>BX119957-18|CAM25922.1| 560|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 16 protein.
Length = 560
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 489 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 535
>BC009392-1|AAH09392.1| 1042|Homo sapiens DEAH (Asp-Glu-Ala-His) box
polypeptide 16 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>BC008825-1|AAH08825.1| 1042|Homo sapiens DEAH (Asp-Glu-Ala-His) box
polypeptide 16 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>BA000025-72|BAB63323.1| 1041|Homo sapiens RNA helicase protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AL845353-14|CAI41883.1| 1041|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 16 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AL845353-13|CAI41882.1| 560|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 16 protein.
Length = 560
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 489 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 535
>AL732442-12|CAI17762.1| 1041|Homo sapiens DEAH (Asp-Glu-Ala-His) box
polypeptide 16 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AL732442-11|CAI17761.1| 560|Homo sapiens DEAH (Asp-Glu-Ala-His)
box polypeptide 16 protein.
Length = 560
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 489 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 535
>AL662798-3|CAI18248.1| 1041|Homo sapiens DEAH (Asp-Glu-Ala-His) box
polypeptide 16 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AL662798-2|CAI18247.1| 560|Homo sapiens DEAH (Asp-Glu-Ala-His) box
polypeptide 16 protein.
Length = 560
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 489 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 535
>AB202095-1|BAE78615.1| 1041|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His)
box polypeptide 16 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AB103604-1|BAF31265.1| 1041|Homo sapiens DBP2 protein protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AB088098-1|BAC54930.1| 1041|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His)
box polypeptide 16 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>AB011149-1|BAA25503.2| 1043|Homo sapiens KIAA0577 protein protein.
Length = 1043
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 972 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1018
>AB001601-1|BAA25908.1| 1041|Homo sapiens ATP-dependent RNA helicase
#3 protein.
Length = 1041
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -3
Query: 448 IHHNS-MFEM----VLYHQFVLTQCVFQEP*LDL-ILWVLQFLPHYF 326
IH NS +FE +LYH+ VLT F L++ W+L+ PHY+
Sbjct: 970 IHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016
>S80343-1|AAB35627.1| 659|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 659
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 287 SLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 189
SL RN P + + ++IS L +F H + A+P
Sbjct: 61 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYP 93
>BT007394-1|AAP36058.1| 660|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 660
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 287 SLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 189
SL RN P + + ++IS L +F H + A+P
Sbjct: 61 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYP 93
>BC014619-1|AAH14619.1| 660|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 660
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 287 SLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 189
SL RN P + + ++IS L +F H + A+P
Sbjct: 61 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYP 93
>BC000528-1|AAH00528.1| 660|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 660
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 287 SLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 189
SL RN P + + ++IS L +F H + A+P
Sbjct: 61 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYP 93
>AK222797-1|BAD96517.1| 660|Homo sapiens arginyl-tRNA synthetase
variant protein.
Length = 660
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 287 SLSVHRNTPIRTLPSVISILNFIFNHFLSFAFP 189
SL RN P + + ++IS L +F H + A+P
Sbjct: 61 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYP 93
>AF283342-1|AAL38107.1| 881|Homo sapiens candidate tumor suppressor
protein protein.
Length = 881
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 274 CTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDT 417
C D+D + G CS+ +N G V G +M P +I+ T
Sbjct: 153 CKDQDECAVYGTCSQTCRNTHGSYTCSCVEGYLMQPDNRSCKAKIEPT 200
>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
receptor related protein-deleted in tumor protein.
Length = 4599
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 274 CTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDT 417
C D+D + G CS+ +N G V G +M P +I+ T
Sbjct: 153 CKDQDECAVYGTCSQTCRNTHGSYTCSCVEGYLMQPDNRSCKAKIEPT 200
>AC068287-1|AAY24318.1| 223|Homo sapiens unknown protein.
Length = 223
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 274 CTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDT 417
C D+D + G CS+ +N G V G +M P +I+ T
Sbjct: 38 CKDQDECAVYGTCSQTCRNTHGSYTCSCVEGYLMQPDNRSCKAKIEPT 85
>BC054492-1|AAH54492.1| 997|Homo sapiens RABGAP1 protein protein.
Length = 997
Score = 29.1 bits (62), Expect = 8.8
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 133 MSNEGNKTTSEAPQVVEEEGKAKLRKW-LNMKFRIEMTDGRVLIGVFLCTDRDANVILGA 309
+S G+ + A +++E G+ L KW LN+ R + V GV + +L
Sbjct: 451 LSGSGDVSKECAEKILETWGEL-LSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAG 509
Query: 310 CSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQTYYYD 444
C NN+ E+ R+L P ++ I+ T P+ Y+ D
Sbjct: 510 CH----NNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKD 550
>AL365338-3|CAH70298.1| 997|Homo sapiens RAB GTPase activating
protein 1 protein.
Length = 997
Score = 29.1 bits (62), Expect = 8.8
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 133 MSNEGNKTTSEAPQVVEEEGKAKLRKW-LNMKFRIEMTDGRVLIGVFLCTDRDANVILGA 309
+S G+ + A +++E G+ L KW LN+ R + V GV + +L
Sbjct: 451 LSGSGDVSKECAEKILETWGEL-LSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAG 509
Query: 310 CSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQTYYYD 444
C NN+ E+ R+L P ++ I+ T P+ Y+ D
Sbjct: 510 CH----NNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKD 550
>AK131449-1|BAD18594.1| 599|Homo sapiens d) (GAPCENA). protein.
Length = 599
Score = 29.1 bits (62), Expect = 8.8
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 133 MSNEGNKTTSEAPQVVEEEGKAKLRKW-LNMKFRIEMTDGRVLIGVFLCTDRDANVILGA 309
+S G+ + A +++E G+ L KW LN+ R + V GV + +L
Sbjct: 455 LSGSGDVSKECAEKILETWGEL-LSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAG 513
Query: 310 CSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQTYYYD 444
C NN+ E+ R+L P ++ I+ T P+ Y+ D
Sbjct: 514 CH----NNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKD 554
>AJ011679-1|CAB40267.2| 997|Homo sapiens Rab6 GTPase activating
protein, GAPCenA protein.
Length = 997
Score = 29.1 bits (62), Expect = 8.8
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 133 MSNEGNKTTSEAPQVVEEEGKAKLRKW-LNMKFRIEMTDGRVLIGVFLCTDRDANVILGA 309
+S G+ + A +++E G+ L KW LN+ R + V GV + +L
Sbjct: 451 LSGSGDVSKECAEKILETWGEL-LSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAG 509
Query: 310 CSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQTYYYD 444
C NN+ E+ R+L P ++ I+ T P+ Y+ D
Sbjct: 510 CH----NNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKD 550
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 29.1 bits (62), Expect = 8.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 247 GRVLIGVFLCTDRDANVILGACSEYLKNNEGE---TEEPRVLGLVMVPGRHIVSI 402
GR G+ D N++L EY+++ + + TE+ R LGLV+ G +V I
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,930,508
Number of Sequences: 237096
Number of extensions: 1125691
Number of successful extensions: 2309
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2276
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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