Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e13
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   1.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 286 DANVILGACSEYLKNNEGETEE 351
           D  ++ G  +E ++N +GET+E
Sbjct: 104 DIQLVKGIANECIENAKGETDE 125


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 286 DANVILGACSEYLKNNEGETEE 351
           D  ++ G  +E ++N +GET+E
Sbjct: 104 DIQLVKGIANECIENAKGETDE 125


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 380 GTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILNFIFNHFLS 201
           G  +R N L  S+S         QA +   A +S+H    + T PS+ + L ++ + ++ 
Sbjct: 145 GLASRTNPLDDSIS---------QANEGFCAVISMHDGLVLYTTPSICTALGYLKDAWIG 195

Query: 200 FAF 192
            +F
Sbjct: 196 RSF 198


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 380 GTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILNFIFNHFLS 201
           G  +R N L  S+S         QA +   A +S+H    + T PS+ + L ++ + ++ 
Sbjct: 140 GLASRTNPLDDSIS---------QANEGFCAVISMHDGLVLYTTPSICTALGYLKDAWIG 190

Query: 200 FAF 192
            +F
Sbjct: 191 RSF 193


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 241 TDGRVLIGVFLCTDRD 288
           TDGR L+G F  T ++
Sbjct: 178 TDGRALLGRFQTTSQN 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,721
Number of Sequences: 438
Number of extensions: 2379
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)