Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e13
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 60 8e-10
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 58 3e-09
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 58 3e-09
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 50 9e-07
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 29 1.7
At4g13370.1 68417.m02090 expressed protein 29 2.2
At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /... 27 6.9
At2g37940.1 68415.m04657 expressed protein 27 6.9
At1g28960.4 68414.m03539 MutT/nudix family protein similar to co... 27 6.9
At1g28960.3 68414.m03541 MutT/nudix family protein similar to co... 27 6.9
At1g28960.2 68414.m03538 MutT/nudix family protein similar to co... 27 6.9
At1g28960.1 68414.m03540 MutT/nudix family protein similar to co... 27 6.9
At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo s... 27 9.1
At1g33590.1 68414.m04158 disease resistance protein-related / LR... 27 9.1
At1g20490.1 68414.m02553 AMP-dependent synthetase and ligase fam... 27 9.1
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 60.1 bits (139), Expect = 8e-10
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYL--------KNNEGETEE 351
+K+ +++N + R+ + DGR LIG F+ DR N++LG C E+ K E EE
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREE 66
Query: 352 PRVLGLVMVPGRHIVSIQIDDTTPSQ 429
R LGLV++ G ++S+ ++ P +
Sbjct: 67 RRTLGLVLLRGEEVISMTVEGPPPPE 92
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 58.0 bits (134), Expect = 3e-09
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYL-------KNNEGETEEP 354
+K+ +++N + R+ + DGR L+G F+ DR N++LG C E+ K E E+
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDR 66
Query: 355 RVLGLVMVPGRHIVSIQIDDTTPSQ 429
R LGLV++ G ++S+ ++ P +
Sbjct: 67 RTLGLVLLRGEEVISMTVEGPPPPE 91
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 58.0 bits (134), Expect = 3e-09
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Frame = +1
Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYL-------KNNEGETEEP 354
+K+ +++N + R+ + DGR L+G F+ DR N++LG C E+ K E E+
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDR 66
Query: 355 RVLGLVMVPGRHIVSIQIDDTTPSQ 429
R LGLV++ G ++S+ ++ P +
Sbjct: 67 RTLGLVLLRGEEVISMTVEGPPPPE 91
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 50.0 bits (114), Expect = 9e-07
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Frame = +1
Query: 118 EQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANV 297
EQA E S+ +TSE + ++LRK L + + + DGR +G F C D+ N+
Sbjct: 2 EQAAERSSTIVASTSEGSDF---DPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 58
Query: 298 ILGACSEY--LKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQ 429
IL EY ++ + E R LG++++P S +D + Q
Sbjct: 59 ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQ 104
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 244 DGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHI 393
DGR ++GV D+ N+IL E + + + E + VLGL ++ G +I
Sbjct: 21 DGRNIVGVLKGFDQATNIILDESHERVFSTK-EGVQQHVLGLYIIRGDNI 69
>At4g13370.1 68417.m02090 expressed protein
Length = 673
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 211 WLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSE-----YLKNNEGETEEPRVLGLVM 375
W N F ++++D V L ++RD ++IL + YL+ E T PR G+
Sbjct: 46 WPNQGFYVQISDSLNSTYVSL-SERDTDLILSNRLQLGQFIYLERLEFATPVPRAAGIRP 104
Query: 376 VPGRH 390
V GRH
Sbjct: 105 VAGRH 109
>At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /
PAP2-related
Length = 305
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 86 LAKVWKYFYTALFCSQVHG 30
LA+ WKY L C +HG
Sbjct: 27 LAENWKYLLAGLLCQYIHG 45
>At2g37940.1 68415.m04657 expressed protein
Length = 305
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 86 LAKVWKYFYTALFCSQVHG 30
LA+ WKY L C +HG
Sbjct: 27 LAENWKYLLAGLICQYIHG 45
>At1g28960.4 68414.m03539 MutT/nudix family protein similar to
coenzyme A diphosphatase [Mus musculus] GI:12746410;
contains Pfam profile PF00293: NUDIX domain
Length = 285
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +1
Query: 115 FEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDAN 294
F+ ++EM + QV +E A L K + R + VLI +F D D
Sbjct: 61 FDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPD---RFKPKRAAVLICLFEGDDGDLR 117
Query: 295 VILGACSEYLKNNEGETEEP 354
VIL S L + GE P
Sbjct: 118 VILTKRSSKLSTHSGEVSLP 137
>At1g28960.3 68414.m03541 MutT/nudix family protein similar to
coenzyme A diphosphatase [Mus musculus] GI:12746410;
contains Pfam profile PF00293: NUDIX domain
Length = 293
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +1
Query: 115 FEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDAN 294
F+ ++EM + QV +E A L K + R + VLI +F D D
Sbjct: 61 FDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPD---RFKPKRAAVLICLFEGDDGDLR 117
Query: 295 VILGACSEYLKNNEGETEEP 354
VIL S L + GE P
Sbjct: 118 VILTKRSSKLSTHSGEVSLP 137
>At1g28960.2 68414.m03538 MutT/nudix family protein similar to
coenzyme A diphosphatase [Mus musculus] GI:12746410;
contains Pfam profile PF00293: NUDIX domain
Length = 285
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +1
Query: 115 FEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDAN 294
F+ ++EM + QV +E A L K + R + VLI +F D D
Sbjct: 61 FDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPD---RFKPKRAAVLICLFEGDDGDLR 117
Query: 295 VILGACSEYLKNNEGETEEP 354
VIL S L + GE P
Sbjct: 118 VILTKRSSKLSTHSGEVSLP 137
>At1g28960.1 68414.m03540 MutT/nudix family protein similar to
coenzyme A diphosphatase [Mus musculus] GI:12746410;
contains Pfam profile PF00293: NUDIX domain
Length = 293
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +1
Query: 115 FEQAKEMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDAN 294
F+ ++EM + QV +E A L K + R + VLI +F D D
Sbjct: 61 FDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPD---RFKPKRAAVLICLFEGDDGDLR 117
Query: 295 VILGACSEYLKNNEGETEEP 354
VIL S L + GE P
Sbjct: 118 VILTKRSSKLSTHSGEVSLP 137
>At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo
sapiens, EMBL:AF007193
Length = 456
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -2
Query: 323 KYSEQAPKITFASLSVHRNTPIRTLPSVISILNFIFNHFLS 201
++SE + S+ ++PIR +P+ + L+ + NH++S
Sbjct: 35 RFSETRALFRSEASSLISDSPIRNVPNSLMTLDAMLNHYVS 75
>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 477
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 394 VSIQIDDTTPSQTYYYD 444
+ + +DD P+QT+YYD
Sbjct: 354 IKMSLDDWKPAQTFYYD 370
>At1g20490.1 68414.m02553 AMP-dependent synthetase and ligase family
protein similar to SP|Q42524 and SP|Q9S725; contains
Pfam AMP-binding enzyme domain PF00501
Length = 447
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Frame = -2
Query: 407 ICIDTMCLPGTMTRPNTLGSS---------VSPSLFFKYSEQAPKITFASLSV 276
+C+ M L +T NTL +S +P+L F S+ APK+ A++SV
Sbjct: 105 VCLSVMSLGAVVTTANTLNTSGEISKQIAQSNPTLVFTTSQLAPKLA-AAISV 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,244
Number of Sequences: 28952
Number of extensions: 168687
Number of successful extensions: 487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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