Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e11
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.5  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    27   3.3  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    27   3.3  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   5.8  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 112  NA*SNKMKITEPKTDEVKETPNEEAEKVPLYGTLQWIYYWSDFEGHLPTPINVSITGSIP 291
            N  S+ +  T  K  +  +     ++ +PL+   +W    S F  H    I + ITGS+ 
Sbjct: 2127 NEDSSVLGWTSLKVSKHTDPLRATSDFIPLFSMQRWNSITSMFFAHASGSIALRITGSVL 2186

Query: 292  YTC--PELKWYNFD 327
            +    P L+ YN +
Sbjct: 2187 FALVPPALEKYNLE 2200


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 244 GHLPTPINVSITGSIPYTCPELKWYNFDVFPHKVKLSNTGYTV-LIGAKWKAERP 405
           G++PT +  ++ GS+  + P L+  N     H   + NT + + L G +  + +P
Sbjct: 27  GNVPTSVLCNVEGSLLNSNPALRQPNLKCIKHNQDVENTTFQLDLRGCRVPSSQP 81


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 91  ENLNFSVNA*SNKMKITEPKTDEVK-ETPNEEAEKVPL 201
           ENL+ +    S KMKITEPKT   +   P++E  ++ L
Sbjct: 63  ENLSKAEQQKSAKMKITEPKTPFQRFLLPDDEVPEINL 100


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 163 KETPNEEAEKVPLYGTLQWIYYW--SDFEGHLPTPINVSI 276
           K+TP+EEA +V  Y   Q   YW   +F G  P   N+ +
Sbjct: 24  KQTPDEEAFEVMNYALSQGSNYWDAGEFYGVDPPTSNLDL 63


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 91  ENLNFSVNA*SNKMKITEPKTDEVKETPNE 180
           ENLNF++    +     E   D +KET NE
Sbjct: 85  ENLNFNIRQNISTTLNLEKTNDSIKETKNE 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,398
Number of Sequences: 5004
Number of extensions: 65216
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)