Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e11
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   5e-12
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   5e-10
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)         59   3e-09
SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)        52   4e-07
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)               44   1e-04
SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)        37   0.013
SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  30   1.5  
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  30   1.5  
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)             29   2.6  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.1  
SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_56295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
 Frame = +1

Query: 205 GTLQWIYYWSDFEGHLPTPINVSITGSIPY--TCPELKWYNFDVFP--HKVKLSNTGYTV 372
           G  +W   +S   G   +PI++ IT S+ +  +  EL++ NFD  P   K+ L N G+  
Sbjct: 436 GPSKWSSSFSQCNGSSQSPIDI-ITSSVAFDQSLGELQFVNFDTIPTGSKISLKNNGHAF 494

Query: 373 LIGAKWKAERPYLEGGPFQDKHIFSQIHFHWGADMMEGSDHTVDDRRYPGEMQVTFFRSE 552
            +     A    + GG     +   Q H HWG+   +GS+H +D + + G + +  + ++
Sbjct: 495 QVNML-SAGTFTVSGGGLGATYSTVQFHLHWGSKNEQGSEHLIDGKAFAGAIHIVSYNTK 553

Query: 553 YMTQEEALRHPDGVVMICYLIKV 621
           Y     A+   DG+ ++  L+KV
Sbjct: 554 YPNISAAVDKSDGLAVVGILLKV 576


>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = +1

Query: 409 LEGGPFQDKHIFSQIHFHWGADMMEGSDHTVDDRRYPGEMQVTFFRSEYMTQEEALRHPD 588
           +  GP   K+ F+Q HFHWG D  EGS+H VD + YP EM +  + S+      +    D
Sbjct: 2   ITSGPLSHKYKFAQFHFHWGKDEKEGSEHRVDGKMYPSEMHIVHYNSDLYKDAASAMSSD 61

Query: 589 GVVMICYL 612
               +C L
Sbjct: 62  NKDGLCVL 69


>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
          Length = 338

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 7/147 (4%)
 Frame = +1

Query: 199 LYGTLQWIYYWSDFEGHLPTPINVSITGSIPYTCPELKWY--NFDVFPHKVK--LSNTGY 366
           ++G   W   + + +G   +PIN+ +T  +       ++   NF+ +   +   LSN G 
Sbjct: 18  VFGPDDWASAYPECKGLAQSPINI-VTSKVTRVSRPFRYMKINFNNYNGGLACFLSNDGK 76

Query: 367 TVLIGAKWKAERPYLEGGPFQDKHIFSQ---IHFHWGADMMEGSDHTVDDRRYPGEMQVT 537
           T+    +    + +++  P +D H   Q   + FH+G +   GS+H VD RR+PGE+Q+ 
Sbjct: 77  TLDFKVRQGLGQAFIDN-PVEDPHDRYQLETVRFHFGCNDWLGSEHAVDGRRHPGEIQMI 135

Query: 538 FFRSEYMTQEEALRHPDGVVMICYLIK 618
           F  ++Y    +A    DG++++   ++
Sbjct: 136 FHNTKYSNVSDAADKSDGLLVVAAFMR 162


>SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)
          Length = 252

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
 Frame = +1

Query: 205 GTLQWIYYWSDFEGHLPTPINVSITGSIPY--TCPELKWYNFDVFPH--KVKLSNTGYTV 372
           G   W   +    G   +PIN+ +T S+ Y  +  +L++ NFD  P   K+ + N G+  
Sbjct: 113 GPDHWANRYPACNGSSQSPINI-VTSSVMYDSSLGKLQFNNFDRIPSGAKIMVRNNGHAF 171

Query: 373 LIGAKWKAERPYLEGGPFQDKHIFSQIHFHWGADMMEGSDHTVDDRRYPGEMQVTFFRSE 552
            +         Y+ GG        +Q H H G D   G++H +D +R    + +  + ++
Sbjct: 172 QVNFM-TPNLFYVHGGGLGANFTTAQFHMHLGEDDTRGAEHLIDGQRNAACIHIVNYNTK 230

Query: 553 YMTQEEALRHPDGVVMICYLIK 618
           Y     A    DG+ +I  +++
Sbjct: 231 YPDISTAANKSDGLAVIGVILE 252


>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
          Length = 291

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 415 GGPFQDKHIFSQIHFHWGADMMEGSDHTVDDRRYPGEMQVTFFRSEYMTQEEALRHPDGV 594
           G     ++  +Q HFH G+  ++GS+H +   +YP EM +  +  +Y     A    DG+
Sbjct: 109 GADLSSRYRLAQFHFHVGSSDIQGSEHHIHGVKYPLEMHLVHYNDKYPNASSAQGLLDGL 168

Query: 595 VMICYLIK 618
            +I  L +
Sbjct: 169 AVISVLFE 176


>SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)
          Length = 134

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = +1

Query: 205 GTLQWIYYWSDFEGHLPTPINVSITGSIPYTCPELKWYNFDVFPHKVKLSNTGYTVLIGA 384
           G L+W   +   E    +PI++        +     W  ++   +   L+N G T+ +  
Sbjct: 17  GPLRWHKCYIGAEPGHQSPIDIVTKDVTQDSSLGSLWNTYEPVANST-LTNDGRTLQL-- 73

Query: 385 KWKAERPYLEGGPFQDKHIFSQIHFHWGA-DMMEGSDHTVDDRRYPGEM 528
            +      L GGP  D++  + I FHW A +   GS+H +D + +  E+
Sbjct: 74  TFANNNNVLSGGPLTDEYQLAMIKFHWAATEESAGSEHMIDSQGHAIEV 122


>SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -1

Query: 615  YQITYHYNSVGVTQSFLLRHVLRSEERY-----LHFTRIPSIVDCVVTALHHVSSPVEMN 451
            YQ ++   SV + +S +LR ++   ER      +  +R+P  +D +V  +H V   V   
Sbjct: 1261 YQRSFRETSVNMVRSIMLRKMIGENERLTIKSKVEQSRLPPCIDNLVPHMHRVKHRVASY 1320

Query: 450  LRKDVLVLER 421
             R D  V  R
Sbjct: 1321 KRADQAVFWR 1330


>SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 304 ELKWYNFDVFPHKVKLSNTGYTVLIGAKWKAE----RPYLEGGPFQDKHIFSQIH 456
           +L W N  + PH+VK+     +   GA+W ++    R +LE    +D H F   H
Sbjct: 229 DLSWLNIHLLPHEVKVVEVRCSNGYGARWTSDGKEFRGFLE-PQMEDGHSFKWRH 282


>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 304 ELKWYNFDVFPHKVKLSNTGYTVLIGAKWKAE----RPYLEGGPFQDKHIFSQIH 456
           +L W N  + PH+VK+     +   GA+W ++    R +LE    +D H F   H
Sbjct: 229 DLSWLNIHLLPHEVKVVEVRCSNGYGARWTSDGKEFRGFLE-PQMEDGHSFKWRH 282


>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
          Length = 406

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 541 RTLPAFHQDTFYRRLCGHCPPSCQLPSGNEFAKRCACL-GTVH 416
           R  P  H     R + G   PSC  PS ++  +RC C  G +H
Sbjct: 98  RVCPRIHYSALARLIIG-AMPSCTKPSRDQCGQRCECKDGRLH 139


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 490 HCPPSCQLPSGNEFAKRCACLGTVHLLST 404
           H P +C+  S N     C C+  +H LST
Sbjct: 353 HVPCTCKYSSKNNAFDVCLCIAVIHHLST 381


>SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 223 YYWSDFEGHLPTPINVSITGS 285
           YYW  ++  L  PI+ SITG+
Sbjct: 107 YYWCQYQAVLLVPISASITGA 127


>SB_56295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 578 RRASSC--VMYSDRKNVTCISPGYLLSSTVWSLPSI 477
           RR++SC  V Y  R    CI+PG  ++ST  ++  I
Sbjct: 193 RRSASCIKVFYCPRNTWACITPGKSVNSTTRAIVQI 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,178,897
Number of Sequences: 59808
Number of extensions: 483735
Number of successful extensions: 3931
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)