Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e11
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 276 YGNIDGGWEVTFEVTPVVYP 217
           + N DG +EV ++   ++YP
Sbjct: 116 FNNADGNYEVRYKSNVLIYP 135


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 276 YGNIDGGWEVTFEVTPVVY 220
           Y N DG +EVT      VY
Sbjct: 118 YNNADGNYEVTLMTKATVY 136


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 276 YGNIDGGWEVTFEVTPVVY 220
           Y N DG +EVT      +Y
Sbjct: 118 YNNADGNFEVTLATKATIY 136


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 481 EGSDHTVDDRRYP 519
           EG D  VD+R YP
Sbjct: 691 EGDDDQVDEREYP 703


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 560 VMYSDRKNVTCISPGYLLSSTVW 492
           ++  +   VTC   GY + S VW
Sbjct: 502 IVAGETLRVTCPVAGYPIESIVW 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,118
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)