Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e11
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15860.1 68418.m01855 expressed protein                             30   1.2  
At3g02410.1 68416.m00228 hypothetical protein weak similarity to...    29   2.8  
At4g21590.1 68417.m03126 bifunctional nuclease, putative similar...    28   6.6  
At4g10800.1 68417.m01760 expressed protein predicted proteins, A...    28   6.6  

>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -1

Query: 663 STTQLKCLSGFTP-YNLYQITYHYNSVGVTQSFLLRHVLRSEERYLHFTRIPSIVDCVVT 487
           + +Q+K   G +  YNLY++  H+++ G+ +S  L  ++  EE +  F+    + D VV 
Sbjct: 261 TVSQIKAYFGLSGGYNLYKLVDHFHNRGLYRSIFL-SIMEGEESFEKFSPEVRLKDPVVG 319

Query: 486 ALHHVSSPV 460
               +  P+
Sbjct: 320 KAASLLPPI 328


>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
           kynurenine formamidase [Mus musculus] GI:21552719
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 663 STTQLKCLSGFTP-YNLYQITYHYNSVGVTQSFLLRHVLRSEERYLHFT 520
           S +Q+K   G +  YNL+ +  H+++ G+ +S  L  ++  EE +  F+
Sbjct: 256 SVSQIKAYFGLSGGYNLFNLVEHFHNRGLYRSIFL-SIMEGEESFKQFS 303


>At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/65 (20%), Positives = 32/65 (49%)
 Frame = +1

Query: 151 TDEVKETPNEEAEKVPLYGTLQWIYYWSDFEGHLPTPINVSITGSIPYTCPELKWYNFDV 330
           T+++  T +E ++ +  Y   + + + S + G +  P++    G +     ++ WYN + 
Sbjct: 115 TNQLMST-SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQET 173

Query: 331 FPHKV 345
             H+V
Sbjct: 174 NLHRV 178


>At4g10800.1 68417.m01760 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 283

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 433 KHIF-SQIHFHWGADMMEGSDHTVDDRRYPGEMQVTFFRSE 552
           K++F S +HF    D ++ S   VD+ +   + QV F  SE
Sbjct: 13  KNVFLSALHFAMSIDTLKNSPELVDELKTSAQEQVEFMLSE 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,976
Number of Sequences: 28952
Number of extensions: 348701
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)