Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e09
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.7  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   6.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.1  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   8.1  

>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 85  PSNILLYILLNEMFGILFSTAVMKLSILRVMLCLFN 192
           P N  +Y LLNE    L S  +MK  +    LCL N
Sbjct: 261 PRNHYIY-LLNEQVDFLTSIEIMKNQVTEGKLCLLN 295


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 349 GRRHIHLEFDTLRSPAKQLTTQHLKGSLLSN 441
           G  ++HL+++    P K LTT+  K S   N
Sbjct: 535 GLTYLHLDYNCNLKPTKTLTTKERKKSRFGN 565


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -3

Query: 485 IMLMTMIGRITDRLMLDSRDPFRCCVVSCLAGERRVSNSKCMCRRPGQSHANKGREKL 312
           I   T I  +  +  LDS  PF C   S       +SN + M   P  S++    E L
Sbjct: 109 IFYQTCISELISKFQLDSYRPFFCKWTSSATVSSTISNDE-MSSIPEASYSRNHMEAL 165


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 504 CDKV*KHYVNDNDRTYYRQV 445
           C K  KHYV +ND  Y  +V
Sbjct: 574 CQKCTKHYVLENDSLYKNRV 593


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 558 YFLTNQFTLYIQHSITMRCDKV*KHYVNDNDRTYYRQV 445
           +FL +   LY  +   M  D+  K  +   +  Y RQV
Sbjct: 16  FFLMSSIVLYFNNEFLMFADRCTKDIIPSEELRYLRQV 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,557
Number of Sequences: 5004
Number of extensions: 40821
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)