Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e09
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   28   6.4  
SB_37804| Best HMM Match : Toxin_14 (HMM E-Value=0.03)                 27   8.5  

>SB_13704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -1

Query: 382 ECRIPNVCAGAQGKVTQTKEERSYKNAMVEVHLPFNVTLDIFNSKSKQ-SILVNLIYKFG 206
           E + PN+C   +  VT  K+E +    +V  +  F         K KQ  ++  +IYK G
Sbjct: 5   ELKHPNICGYKEFFVTWDKQESAMFVCIVMDYYKFGDLDRCLKQKRKQKEVIEEMIYKSG 64

Query: 205 IN*MN*ISTTLR 170
            +  + I T LR
Sbjct: 65  NDLCSVIRTMLR 76


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 417 VLRSELLGRRTESVEFQMYVPAPRAKSRKQRKREVIRTQWLKCICHL 277
           VL+    G+      F ++VPA RA  R+Q   + +  QW   +C +
Sbjct: 331 VLQPTECGKLRSQATFSLHVPARRAYPRQQVMVQGMDEQWQADLCDM 377


>SB_37804| Best HMM Match : Toxin_14 (HMM E-Value=0.03)
          Length = 117

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 321 SSFVCVT-LPWAPAHTFGIRHSPFAGQ 398
           S F C T  P AP HT G++H    G+
Sbjct: 26  SHFGCATSYPSAPVHTMGVQHPTLKGR 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,581
Number of Sequences: 59808
Number of extensions: 289805
Number of successful extensions: 1110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)