Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e09
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 29 1.8
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 28 4.2
U97552-6|AAX55683.1| 216|Caenorhabditis elegans Hypothetical pr... 27 7.4
U55371-2|AAL02524.1| 402|Caenorhabditis elegans Hypothetical pr... 27 7.4
U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical pr... 27 7.4
AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 recepto... 27 7.4
AY919614-1|AAY16563.1| 402|Caenorhabditis elegans FLP-2 recepto... 27 7.4
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 9.8
U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 27 9.8
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 376 DTLRSPAKQLTTQHLKGSLLSN--INLSVIR 462
D+L PAK L HL G+LLSN ++ +IR
Sbjct: 482 DSLTLPAKHLELAHLHGNLLSNPDVDFHIIR 512
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 348 WAPAHTFGIRHSPFAGQAAHYAAPEGIPAI*H*PVCNTSYHCH*HN 485
W+P H FG++ +P + +P H P N+S H HN
Sbjct: 39 WSPKHWFGVKGNPDDILKLPLHFDDQLPTSSHHPPLNSSSHHSNHN 84
>U97552-6|AAX55683.1| 216|Caenorhabditis elegans Hypothetical
protein W05H7.4c protein.
Length = 216
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 317 SLFLCLRDFALGAGTYIWN 373
S+FLC+R F A ++IWN
Sbjct: 180 SIFLCVRSFFADALSFIWN 198
>U55371-2|AAL02524.1| 402|Caenorhabditis elegans Hypothetical
protein T19F4.1a protein.
Length = 402
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 94 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 243
+L+ I N + ILFS M+ S + V+LC + F+ F + ++P + +
Sbjct: 15 VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63
>U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical
protein T19F4.1b protein.
Length = 432
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 94 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 243
+L+ I N + ILFS M+ S + V+LC + F+ F + ++P + +
Sbjct: 15 VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63
>AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 432
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 94 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 243
+L+ I N + ILFS M+ S + V+LC + F+ F + ++P + +
Sbjct: 15 VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63
>AY919614-1|AAY16563.1| 402|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 402
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 94 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 243
+L+ I N + ILFS M+ S + V+LC + F+ F + ++P + +
Sbjct: 15 VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 549 TNQFTLYIQHSITMRCDKV*KHYVNDNDRTYYRQVN 442
TN F + I+HS + ++ + V+ + RTY + +N
Sbjct: 83 TNDFIINIEHSSDKKFSRLLQDLVSRDSRTYSKAIN 118
>U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical
protein F11D5.7 protein.
Length = 292
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 76 FKFPSNILLYILLNEMFGILFSTAVMKLSILRVMLCLFNS 195
F PSNILL I+L +F ++ ++ S+L ++ N+
Sbjct: 3 FYVPSNILLMIVLFLLFDVITQIQLITFSVLSEIITEMNN 42
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 394 PANGECRIPNVCAGAQGKVTQTKEERSYKNAMVEVHLPFNVTLDIFNSKSKQSI 233
P R P + G+Q K T+ E ++A +VH P V L N+K+ + +
Sbjct: 354 PTEIRARPPKLLKGSQCKTTKRTREAQRRSANSQVHTPPPVRLT--NAKATEEL 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,751
Number of Sequences: 27780
Number of extensions: 227426
Number of successful extensions: 558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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