Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e08
         (586 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2FM28 Cluster: Putative uncharacterized protein; n=2; ...    33   5.0  

>UniRef50_Q2FM28 Cluster: Putative uncharacterized protein; n=2;
            Methanospirillum hungatei JF-1|Rep: Putative
            uncharacterized protein - Methanospirillum hungatei
            (strain JF-1 / DSM 864)
          Length = 1058

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 178  LSRVSFCHLHGQTWLYAETLIKLLNRC 98
            L R   CHLH  TW+  ET I L  RC
Sbjct: 1016 LGRCHLCHLHPVTWIDDETKIGLCERC 1042


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,779,971
Number of Sequences: 1657284
Number of extensions: 7906217
Number of successful extensions: 18745
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18742
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)