Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e07
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.45
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 28 1.0
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 27 1.4
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 27 1.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.8
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 2.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 2.4
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.2
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 5.5
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 25 7.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 25 7.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 7.3
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 9.6
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 29.1 bits (62), Expect = 0.45
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 115 CGVFSILSLKFILIYKLNIT*SYLFLESLRIHKLHYC 5
C FS+ SLKF +++ S L L I KL YC
Sbjct: 45 CSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYC 81
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.0
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +2
Query: 146 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 325
D Y L L+ D ++L+ Y + + ++ I E ++E+L NE+ ++
Sbjct: 351 DFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELEHTIEQLTINNERDNERM 410
Query: 326 TEVREELENLYLYGKETGDTKYDTE 400
+ ELE + D+ D E
Sbjct: 411 SPAEFELETTQEVEENDSDSHDDEE 435
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 380 DTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDL 502
D Y L+ H++A L +DA IEKA+R D+
Sbjct: 507 DRAYSLLLDELYHVIARLYMRLRDARAQRAQLIEKAERIDI 547
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 359 LYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLK 508
L K+ DT +S R L LL++++ + I FA++ ++EDL K
Sbjct: 67 LLAKKKSDTGLIGYCQSLRGLAYYLLEQYQSSAICFGFALKHLKKEDLTK 116
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 513 LHFNKSSLCAFSIANILFILASLNSLRRQAKRCLCDSNSVSYF 385
L+F+++SL + + FI S + ++ K D NS+SYF
Sbjct: 959 LYFDRASLASTNAYTDPFIPYSTDYTKKNPKEPTADVNSLSYF 1001
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 395 TELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNEKSSV 535
TEL+ L + E K+ ++S+F Q+ +LL +D EK+ +
Sbjct: 62 TELKFISKYLQISIPETKEGPVSSLFKAVSEQKPELLGNTDFEKAQI 108
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 419 LLACLLKEFKDANINSMFAIEKAQREDL 502
+L C+LKE+ D + S FA+ A + L
Sbjct: 917 ILECMLKEYYDTFLKSPFAVPNAVQAQL 944
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 3.2
Identities = 23/92 (25%), Positives = 41/92 (44%)
Frame = +2
Query: 146 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 325
+P +LF KL N ++ + + L K + + +L+ S+ KL+ L E K+
Sbjct: 22 EPLEANLFGKLHNKLLICKAKKENLEK-KLAYQMMYSKLLK---SLPKLSSLEENKLTKL 77
Query: 326 TEVREELENLYLYGKETGDTKYDTELESQRHL 421
E++EN +E +TEL + L
Sbjct: 78 KAPIEDMENTKKELEEIRKQSTETELRYLKSL 109
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 257 DILECRESMEKLNELNEKGRAKITEVREELENLYLY 364
+ ++ ES KLN++ EK + I+++ NL+LY
Sbjct: 280 ETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLY 315
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 KITEVREELENLYLYGKETGDTKYDTELESQRHLLACL-LKEFKDANINSMFA 475
K T+ EEL+ L LY E D+E + + +L + L F NI+ FA
Sbjct: 130 KNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRKNIDLDFA 182
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 281 MEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTE 400
MEK+++L + ++T ++L+ +Y+ G +T +TE
Sbjct: 138 MEKIHDLLSEKNDRLTVHEDKLQGVYVQGLKTIYVSSETE 177
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 149 PYHQSLFAKLENPDVV 196
PYH+ A L+NPD++
Sbjct: 530 PYHELFCALLKNPDII 545
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 438 LRRQAKRCLCDSNSVSYFVSPVSLPYRYKFSNSSRTSVIFALPXXXXXXXXSIDSLHSRI 259
L + K C+ NSV F + + +P SN SV F I+S HS++
Sbjct: 175 LSKLEKTCVQYMNSVQNFPTDIPVPSNLSISNLDVVSVEF--KRLKRNSIFLINSFHSKV 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,448
Number of Sequences: 5004
Number of extensions: 38423
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -