Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e06
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...   110   1e-25
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    90   2e-19
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    81   2e-16
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.43 
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.2  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   9.1  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    25   9.1  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score =  110 bits (265), Expect = 1e-25
 Identities = 47/79 (59%), Positives = 66/79 (83%)
 Frame = +2

Query: 401 NIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGE 580
           +IK+F G+SHP++A+ +  R+GL+LG+    ++SN+ET+V IGESVR EDV+I+Q+GCG 
Sbjct: 5   SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64

Query: 581 INDNLMELFIMINACKIAS 637
           IND+LMEL IMINAC+ AS
Sbjct: 65  INDHLMELLIMINACRSAS 83


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 44/81 (54%), Positives = 56/81 (69%)
 Frame = +2

Query: 395 MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 574
           M N+ VF   SHP + ++I   L L++GR    KFSN ET+V I +SVRG DVYIV    
Sbjct: 1   MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60

Query: 575 GEINDNLMELFIMINACKIAS 637
           G++ND+LMEL IMI+ACK AS
Sbjct: 61  GQVNDHLMELLIMISACKTAS 81


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 38/78 (48%), Positives = 54/78 (69%)
 Frame = +2

Query: 395 MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 574
           M +  +  G SHP++   I  RLG+     + K+F+N ET+VEI ESVR +DV+I+QSG 
Sbjct: 1   MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60

Query: 575 GEINDNLMELFIMINACK 628
             +ND+LMEL I+I+ACK
Sbjct: 61  STVNDSLMELLIIISACK 78


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 26/103 (25%), Positives = 45/103 (43%)
 Frame = -2

Query: 426 ELPVNTFMFGILALGLLKCFSSLLISFTCFSSNCIYIVYDEAVTSLVRSQLRVKLRYILI 247
           E  ++TF+FG+LA  + K        ++ FS+N I+ + +E         L V +   LI
Sbjct: 394 ERKISTFLFGLLASSIAK--------YSFFSNNPIWPILNETNGGKQIPALIVGIIACLI 445

Query: 246 ITINYLGSRRGHLVTYPLQWKCTVTYLCLLK*IIVFCLKSTYC 118
             I ++     + V +    K T     L    ++FCL +  C
Sbjct: 446 FAIFHVQQTTANAVEHFKLRKITALSAALSLGTVLFCLHTFLC 488


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 315 VYDEAVTSLVRSQLRVKLRYI-LIITINYLGSRRGHLVTYP 196
           +Y E  TSLVR  LR++ R +    T  Y     G  + YP
Sbjct: 670 LYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYP 710


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 394 NAEHKSVYWKLSSRHRENYRRKARS 468
           NAE + ++WK S  H  N +RK  S
Sbjct: 16  NAESQKIHWK-SDWHHYNLKRKVAS 39


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 189 WKCTVTYLCLLK*IIVFCLKSTYCLDRD 106
           W CT   LCL    +V+  K T C  +D
Sbjct: 45  WTCTKGLLCLTNQRLVYIAKDTDCDFKD 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,142
Number of Sequences: 5004
Number of extensions: 43371
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)