Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e06
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)          80   2e-15
SB_7442| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-11)                  33   0.19 
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)                   28   5.5  
SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)                 27   9.7  
SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016)         27   9.7  
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     27   9.7  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/40 (90%), Positives = 38/40 (95%)
 Frame = +2

Query: 518 VEIGESVRGEDVYIVQSGCGEINDNLMELFIMINACKIAS 637
           VEI ESVRGEDVYI+QSGCGEINDN+MEL IMINACKIAS
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACKIAS 41


>SB_7442| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-11)
          Length = 350

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = -2

Query: 363 SLLISFTCFSSNCIYIVYDEAVTSLVRSQ-LRVKLRYILIITINYLGSRRGHLVTY-PLQ 190
           SLLI F C+++  + + Y   V S+   Q LR +   I ++ +  L      L+T+ P  
Sbjct: 193 SLLIIFICYTALTVKLKYGSRVLSVSSRQILRDRKLAITLLIVTLLS-----LITWVPFG 247

Query: 189 WKCTVTYLCLLK*IIVFCLKSTYCLDRDLLLNVKKFI 79
              TV Y C+       C K TY  D  L LN  +F+
Sbjct: 248 VYVTVLYYCM------DCKKETYARDLYLALNWLRFL 278


>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 229 RFAEGSLSYVSPAMEVYCY---LSLFVEVNNSVLFKVNIL 119
           RF      Y  P+MEV+ Y   L  +VEV NS +F+  +L
Sbjct: 306 RFKPAYNPYTEPSMEVFSYHEGLKKWVEVGNSGVFRPEML 345


>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
          Length = 423

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 455 ARLGLNLGRATTKKFSNKETNVEIGESVRGE 547
           ARLGLN+ R  TK F    +N E   +V+GE
Sbjct: 249 ARLGLNINRGKTKVFKTNASN-ETPITVQGE 278


>SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 515 NVEIGESVRGEDVYIVQSGCGEINDN 592
           N +IG   RG +  + Q G GE+NDN
Sbjct: 145 NAKIGSDNRGYEEIMGQHGLGEMNDN 170


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 276 LRVKLRYILIITINYLGSRRGHL-VTYPLQWKCTVTYLCLLK*IIVFCLKSTYCL 115
           L + +RY L +T++   S   H  ++  + +  +VT  C L   + +CL  T CL
Sbjct: 334 LLLSVRYCLSVTVHCCLSVTVHYCLSVTVHYCLSVTVHCCLSVTVHYCLSVTVCL 388


>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
          Length = 1641

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 455 ARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQ--SGCGEINDN 592
           ARLGLN+ R  +K F    +N E   +V+GE +  V   +  G I DN
Sbjct: 13  ARLGLNINRGKSKVFKTNASN-ETXITVQGEALEEVDTFTYLGSILDN 59


>SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 515 NVEIGESVRGEDVYIVQSGCGEINDN 592
           N +IG   RG +  + Q G GE+NDN
Sbjct: 154 NAKIGGDNRGYEEIMGQQGLGEMNDN 179


>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 515 NVEIGESVRGEDVYIVQSGCGEINDN 592
           N +IG   RG +  + Q G GE+NDN
Sbjct: 344 NSKIGSDNRGYEEIMGQQGLGEMNDN 369


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 515 NVEIGESVRGEDVYIVQSGCGEINDN 592
           N +IG   RG +  + Q G GE+NDN
Sbjct: 57  NSKIGSDNRGYEEIMGQQGLGEMNDN 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,389
Number of Sequences: 59808
Number of extensions: 305475
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)