Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e06
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 / ... 84 6e-17
At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 / ... 84 6e-17
At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase, put... 80 1e-15
At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 / ... 79 2e-15
At3g53760.1 68416.m05939 tubulin family protein similar to SP|Q9... 32 0.28
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h... 30 1.5
At5g13720.1 68418.m01597 expressed protein 28 4.5
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 28 6.0
At3g20240.1 68416.m02564 mitochondrial substrate carrier family ... 27 7.9
At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein con... 27 7.9
At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein con... 27 7.9
>At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 /
phosphoribosyl diphosphate synthetase 1 (PRSI) identical
to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 403
Score = 84.2 bits (199), Expect = 6e-17
Identities = 42/96 (43%), Positives = 65/96 (67%)
Frame = +2
Query: 350 EINKEEKHFNNPSARMPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIG 529
E + EK N + R+ K+F+G+++P +A+ I +GL+LG+ K+F++ E V++
Sbjct: 78 ESARMEKSVNRTNTRL---KLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQ 134
Query: 530 ESVRGEDVYIVQSGCGEINDNLMELFIMINACKIAS 637
ESVRG DVY+VQ C N+NLMEL IM++AC+ AS
Sbjct: 135 ESVRGCDVYLVQPTCTPTNENLMELLIMVDACRRAS 170
>At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 /
phosphoribosyl diphosphate synthetase 1 (PRSI) identical
to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 352
Score = 84.2 bits (199), Expect = 6e-17
Identities = 42/96 (43%), Positives = 65/96 (67%)
Frame = +2
Query: 350 EINKEEKHFNNPSARMPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIG 529
E + EK N + R+ K+F+G+++P +A+ I +GL+LG+ K+F++ E V++
Sbjct: 27 ESARMEKSVNRTNTRL---KLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQ 83
Query: 530 ESVRGEDVYIVQSGCGEINDNLMELFIMINACKIAS 637
ESVRG DVY+VQ C N+NLMEL IM++AC+ AS
Sbjct: 84 ESVRGCDVYLVQPTCTPTNENLMELLIMVDACRRAS 119
>At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase,
putative / phosphoribosyl diphosphate synthetase,
putative very strong similarity to phosphoribosyl
pyrophosphate synthase [Spinacia oleracea] GI:4902849;
contains Pfam profile PF00156: Phosphoribosyl
transferase domain
Length = 394
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/78 (46%), Positives = 58/78 (74%)
Frame = +2
Query: 404 IKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEI 583
+++F+G+++P +A+ I LGL+LG+ K+F++ E V++ ESVRG DV++VQ C
Sbjct: 78 LRIFSGTANPILAQEISCYLGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPA 137
Query: 584 NDNLMELFIMINACKIAS 637
N+NLMEL +MI+AC+ AS
Sbjct: 138 NENLMELLVMIDACRRAS 155
>At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 /
phosphoribosyl diphosphate synthetase 2 (PRS2) identical
to SP:Q42583 from [Arabidopsis thaliana]; strong
similarity to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 400
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/78 (44%), Positives = 58/78 (74%)
Frame = +2
Query: 404 IKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEI 583
+K+F+G+++P +++ I +GL LG+ + K+F++ E V++ ESVRG DV++VQ C
Sbjct: 90 LKLFSGTANPALSQEIAWYMGLELGKVSIKRFADGEIYVQLKESVRGCDVFLVQPTCTPT 149
Query: 584 NDNLMELFIMINACKIAS 637
N+NLMEL IM++AC+ AS
Sbjct: 150 NENLMELLIMVDACRRAS 167
>At3g53760.1 68416.m05939 tubulin family protein similar to
SP|Q9SC88 Gamma-tubulin complex component 4 homolog
{Medicago truncatula}, SP|Q9UGJ1|GCP4_HUMAN
Gamma-tubulin complex component 4 {Homo sapiens};
contains Pfam profile PF04130: Spc97 / Spc98 family
Length = 745
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 329 FEEKQVKEINKEEKHFNNPSARMPNIKVFTGSSHPDIAKTIVARLG 466
F+ K I +E+K+F+ S RMP+ V SS D+ ++ V+ G
Sbjct: 448 FQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVSLTG 493
>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
heavy chain-like protein, potato, PIR:T07397
Length = 625
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 373 LQQPKCQNAEHKSVYWKLSSRHRENYRRKARSKL 474
LQ+ +C EHK ++W + ++ E+ +KA S L
Sbjct: 443 LQEVECLVNEHKKLFWITNDKYLEDIEKKAISPL 476
>At5g13720.1 68418.m01597 expressed protein
Length = 262
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 426 ELPVNTFMFGILALGLLKCFSSLLISFTCFSSNCIYIV 313
E V +F L LL SL S CF + C+YIV
Sbjct: 80 ESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIV 117
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 314 TI*MQFEEKQVKEINKEEKHFNNPSARMPNIKVF 415
T+ + E+ KE+NK +KHF+ M N K F
Sbjct: 376 TVGVDIEKFDCKEVNKMQKHFSGLVDEMANKKDF 409
>At3g20240.1 68416.m02564 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier proteins
Length = 348
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -2
Query: 333 SNCIYIVYDEAVTSLVRSQLRVKLRYILIITINYLGSRRGHLVTYPLQ 190
S C Y +YD+ TS +S+ + L ++ + L +++PL+
Sbjct: 228 STCYYFMYDKMKTSYCKSKNKKALSRPEMLVLGALAGLTASTISFPLE 275
>At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Myrosinase precursor (SP:P37702) [Arabidopsis
thaliana]; similar to thioglucosidase (GI:871992)
[Arabidopsis thaliana]
Length = 511
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 619 VYHYEKFHQVIVYFPTAALNNVDILTSNGFADFNVG 512
VY+ F Q++ Y N + +T NG AD ++G
Sbjct: 392 VYYPPGFRQILNYIKDNYKNPLTYITENGVADLDLG 427
>At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to thioglucosidase (GI:871992) [Arabidopsis
thaliana]
Length = 511
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 619 VYHYEKFHQVIVYFPTAALNNVDILTSNGFADFNVG 512
VY+ F Q++ Y N + +T NG AD ++G
Sbjct: 392 VYYPPGFRQILNYIKDNYKNPLTYITENGVADLDLG 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,175
Number of Sequences: 28952
Number of extensions: 215436
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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