Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e05
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               30   1.00 
SB_23069| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_57975| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-15)                 29   3.0  
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)               27   7.0  

>SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -2

Query: 335 QHNLISRVRLVSIGFDIPTVMTDRYSSFVKGSNRTRRLAYS*HSILWCLENHWI 174
           Q N IS V +++ G+ +  +  +RY++ ++     RRL    H++ + +   W+
Sbjct: 17  QANTISNVPILATGWTLTVIAIERYNALIQPMKNARRLTK--HNVWYAIAVMWV 68


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 322 IKLCC*CYNVLEICSVLVAKVV*FCESVYCILL 420
           +KLCC   + + +C V+   VV  C  +YC++L
Sbjct: 448 VKLCCVVLHCVVLCCVVPCCVVLCCVVLYCVVL 480


>SB_23069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 79  CSGCPSPCNSTRNCTPCCSGGSLVT-VYSQ 165
           C  C +PC   +N  PC  G SL++  Y Q
Sbjct: 329 CGQCLNPCTYGQNLNPCTYGQSLISCTYGQ 358


>SB_57975| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-15)
          Length = 256

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 335 QHNLISRVRLVSIGFDIPTVMTDRYSSFVKGSNRTRRLAYS 213
           Q N ++ V L++ G  +  +  +RY++ VK    +RRL  S
Sbjct: 74  QPNTLANVALLATGLTLMVLSVERYNALVKPMRLSRRLTRS 114


>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 40  NKLQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 144
           N     + A    C  CP  C + R+C  C   G+
Sbjct: 547 NATSGYVGAFCDDCPTCPGQCEANRDCVQCMKFGT 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,251
Number of Sequences: 59808
Number of extensions: 320705
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)