BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte10e05 (519 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 30 0.86 U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 4.6 AC024838-8|AAF60822.1| 234|Caenorhabditis elegans Thaumatin fam... 28 4.6 >AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like (grd related) protein31 protein. Length = 156 Score = 30.3 bits (65), Expect = 0.86 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 4/27 (14%) Frame = +1 Query: 73 GGCSGCPSPCNSTRNCT----PCCSGG 141 GGC GC C C PCC GG Sbjct: 31 GGCGGCGGGCGGGCGCAPPPPPCCGGG 57 >U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd related) protein 6 protein. Length = 240 Score = 27.9 bits (59), Expect = 4.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 70 RGGCSGCPSPCNSTRNCTPCCS 135 RGGC GCP+P R PC + Sbjct: 24 RGGCGGCPTPMCQPR--MPCAA 43 >AC024838-8|AAF60822.1| 234|Caenorhabditis elegans Thaumatin family protein 6 protein. Length = 234 Score = 27.9 bits (59), Expect = 4.6 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = +1 Query: 64 AIRGGCSGCPSPCNSTRNCTPCCSG 138 ++ GC SPC++ R+ CC G Sbjct: 161 SVNNNVVGCRSPCDALRSDRECCRG 185 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,952,734 Number of Sequences: 27780 Number of extensions: 245704 Number of successful extensions: 672 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 669 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1007108110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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