Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e05
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 423 ICKLEDICCKTLSWKLHYQR 482
           +C   D+C KTLS KL  +R
Sbjct: 370 VCYTCDVCGKTLSTKLTLKR 389



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 110 VELQGDGHPLQPPRIA 63
           V+  G GH LQPP +A
Sbjct: 324 VKFPGMGHGLQPPDLA 339


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 222 QPPRPIAAFDKATIAIGHHGR 284
           QPPR  A F    I + H G+
Sbjct: 332 QPPRGAADFTAQVIVLNHPGQ 352


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 222 QPPRPIAAFDKATIAIGHHGR 284
           QPPR  A F    I + H G+
Sbjct: 43  QPPRGAADFTAQVIVLNHPGQ 63


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 400 SVYCILLIFAN*KTSAAKPYLGNFITKENIIDMF 501
           +V+ +LL      TS   P LG F+    I+D F
Sbjct: 283 TVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTF 316


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 403 QIHKIILLLPLTQNIFLGHYNIN 335
           Q +K I L  LT+N+ + +YNI+
Sbjct: 88  QEYKNIKLYGLTKNLEIKNYNID 110


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 504 LKHINYILFGNEVSKIGFCSRC 439
           L+H+N+ + G  V+ +   SRC
Sbjct: 393 LEHVNFQILGANVNDLIRNSRC 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,313
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)