Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e02
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   2.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   2.9  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    25   6.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    24   8.9  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    24   8.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = +1

Query: 19   KKLVKRYYKFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPVPCG 198
            ++L+KR    PK+L   +   +K  + N LR KI   ++ Y S P      +N     CG
Sbjct: 3253 QQLLKRDDFIPKILNYNL---EKELSIN-LRRKI---EQDYFSNPIFTFDSVNRASKACG 3305

Query: 199  PWEPWYKDMQSYYNKVL 249
            P   W K + + Y+KVL
Sbjct: 3306 PLLLWIKSICN-YSKVL 3321


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 170 WASHRSGFDEYCLLFKH 120
           + SH SGF EYC LF H
Sbjct: 38  YESH-SGFSEYCTLFGH 53


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 134 DNIRQSLIDVTPI*MSFQYRVDHGSRGTKTCKAIITRFW 250
           D +   L+   P   +  Y  + GS   +TC  +I ++W
Sbjct: 91  DKLANLLVSEHPDVFARAYFANSGSEAVETCLKLILQYW 129


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 34  RYYKFPKM-LRATILRAKKTFTANTLRVKICLNKRQYSSKPD 156
           RY   P M L AT     K    NTLR++ CL  +   ++P+
Sbjct: 676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPN 717


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 335 NPVHQATWLKNVRILNH 385
           NP H   W    +ILNH
Sbjct: 72  NPAHYTVWAYRFQILNH 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,801
Number of Sequences: 5004
Number of extensions: 35583
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)