Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e02
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor ...    33   0.069
Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    31   0.48 
U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protei...    28   2.6  
U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protei...    28   2.6  
U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z54342-14|CAA91151.2|  107|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AY204190-1|AAO39194.1|  382|Caenorhabditis elegans nuclear recep...    27   6.0  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    27   6.0  
AF022978-5|AAG24181.2|  382|Caenorhabditis elegans Nuclear hormo...    27   6.0  
Z54342-7|CAA91149.1|  460|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor
           associated proteinfamily protein 2 protein.
          Length = 96

 Score = 33.5 bits (73), Expect = 0.069
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 181 LPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYT 300
           +PVP   ++  Y ++Q  +N  L +   +FA SF   IYT
Sbjct: 38  MPVPFQSYKKVYGELQGKFNTYLAVSAVFFASSFATAIYT 77


>Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical
           protein ZK938.6 protein.
          Length = 460

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 277 RKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIVSYL 125
           R+ T+ +   +PC    A L  +AP+ +++ E     RH   A++N++  L
Sbjct: 24  RQPTQWKHLAKPCLILIAILVLSAPVAYSLSELIMVARHKSPAVSNLIELL 74


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 313 STNFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTAP 203
           S+NFP I    + +QTK  Q P+ C  S A  CT  P
Sbjct: 157 SSNFPPIKVV-VNQQTKASQCPQACAQSCANSCTAQP 192


>U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protein
           1, isoform a protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 164 SHRSGFDE-YCLLFKHILTLNVFAVKVFFALKIV 66
           SH +G  E +C+   ++L    F V VF  +KIV
Sbjct: 34  SHDAGCTEMFCIAMSYVLIFLTFPVSVFMCIKIV 67


>U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protein
           1, isoform b protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 164 SHRSGFDE-YCLLFKHILTLNVFAVKVFFALKIV 66
           SH +G  E +C+   ++L    F V VF  +KIV
Sbjct: 34  SHDAGCTEMFCIAMSYVLIFLTFPVSVFMCIKIV 67


>U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical
           protein C50E3.16 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 338 GWAGGEKFKYKLSVYIIMPNEKANQATPITRTLL 237
           GWA   +  Y   +Y+ +P E    AT  TR  L
Sbjct: 82  GWATATEIAYFAYIYVKVPKEDYKSATAYTRAAL 115


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 134 LLFKHILTLNVFAVKVFF--ALKIVALSILGNL 42
           LLF H++ L+ FAV +FF   L +V   +L  L
Sbjct: 176 LLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMEL 208


>Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical
           protein C08H9.4b protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 268 TKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIV 134
           T+ +   +PC+   A L  +AP+ +++ E     RH    ++N++
Sbjct: 24  TQWKHLVKPCFILIAILVFSAPVAYSLSELIMIARHKSPTVSNLI 68


>Z54342-14|CAA91151.2|  107|Caenorhabditis elegans Hypothetical
           protein C08H9.4a protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 268 TKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIV 134
           T+ +   +PC+   A L  +AP+ +++ E     RH    ++N++
Sbjct: 24  TQWKHLVKPCFILIAILVFSAPVAYSLSELIMIARHKSPTVSNLI 68


>Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical
           protein C18D1.1 protein.
          Length = 645

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 273 FLIRHDDIHGKFVLKFLATSPTRS 344
           FLI+ +D  G+F+ +FLA  P RS
Sbjct: 602 FLIKCNDDSGEFLTEFLAQLPVRS 625


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 43  KFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPVP 192
           KFPK  +  ILRA    T N L V   L+++ +SS+      H   + VP
Sbjct: 135 KFPKRSQIDILRAVPNETRNIL-VTESLSEKLHSSESRNFGMHNTSVNVP 183


>AY204190-1|AAO39194.1|  382|Caenorhabditis elegans nuclear receptor
           NHR-106 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 319 NLSTNFPCISSCRMRKQTKQRQSPE 245
           N +  FP   SCRMRK  K    PE
Sbjct: 50  NFTGKFPQCKSCRMRKCIKMGMMPE 74


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 134 LLFKHILTLNVFAVKVFF--ALKIVALSILGNL 42
           LLF H++ L+ FAV +FF   L +V   +L  L
Sbjct: 176 LLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMEL 208


>AF022978-5|AAG24181.2|  382|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 106 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 319 NLSTNFPCISSCRMRKQTKQRQSPE 245
           N +  FP   SCRMRK  K    PE
Sbjct: 50  NFTGKFPQCKSCRMRKCIKMGMMPE 74


>Z54342-7|CAA91149.1|  460|Caenorhabditis elegans Hypothetical
           protein C08H9.12 protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 313 STNFPCISSCRMRKQTKQ----RQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQAL 146
           ST+ P +    + ++T +    +    PC    A L  +AP+  ++ E     RH  + +
Sbjct: 8   STSIPLLRIQNITRKTNRFAQWKNLINPCLILIAILVISAPVAFSLSELIMVARHKSETV 67

Query: 145 TNIVSYL 125
           +N+++ L
Sbjct: 68  SNLINML 74


>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 265 KQRQSPEPCYNSFACLCTT-APMVHTVLEA-HSYGRHI 158
           + RQ  E CYNS++ +  T    ++T+LE  H Y  H+
Sbjct: 581 RTRQVVEMCYNSWSYVARTGCEELYTLLEGLHKYSIHL 618


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 338 GWAGGEKFKYKLSVYIIMPNEKANQATPITRTLL 237
           GWA   +  Y   +Y+ +P  +   AT  TR  L
Sbjct: 104 GWATATEIAYFAYIYVKVPKTEYKSATAFTRAAL 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,044,198
Number of Sequences: 27780
Number of extensions: 203525
Number of successful extensions: 657
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)