Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e02
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   7.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 338 PVHQATWLKNVRILNHE 388
           P+ +  WLKN   LNH+
Sbjct: 429 PLPRVQWLKNDEALNHD 445


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 223 MQSYYNKVLVIGVAWFAFSFGM 288
           +Q++    LV+ ++WF+F  G+
Sbjct: 204 IQTFAPSTLVVMLSWFSFWLGL 225


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 133 RQYSSKPDRCDAHMNELPVPCGPWEPWYKDMQSYYNKVLVIGVAW 267
           R+Y  + +  D  + E P+   P  P+ +D+    N +     AW
Sbjct: 296 REYDRELEDFDGRLFEFPIKFVPSYPFEEDINEGSNYMQTRVPAW 340


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -3

Query: 390 HSWFNILTFFNHVAW 346
           HSW  ++   +H++W
Sbjct: 92  HSWMTLMWTDSHLSW 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +1

Query: 286  MMIYTESLYLNFSPPAQP 339
            +++ +ES+ +++ PP+QP
Sbjct: 1189 LVMSSESILVSWRPPSQP 1206


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 175 NELPVPCGPW 204
           N LP P GPW
Sbjct: 125 NFLPRPMGPW 134


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 175 NELPVPCGPW 204
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 175 NELPVPCGPW 204
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 175 NELPVPCGPW 204
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 175 NELPVPCGPW 204
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,231
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)