Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e02
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing ...    29   1.0  
At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing ...    29   1.4  
At1g29550.1 68414.m03614 eukaryotic translation initiation facto...    27   4.2  
At1g55900.1 68414.m06411 NLI interacting factor (NIF) family pro...    27   7.3  
At1g33410.1 68414.m04136 expressed protein                             26   9.7  
At1g30220.1 68414.m03697 sugar transporter family protein simila...    26   9.7  

>At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP4 gi:5059396
           from [Arabidopsis thaliana]; EMBL:AF155817
          Length = 307

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 29/87 (33%), Positives = 37/87 (42%)
 Frame = -2

Query: 421 KLSLFNITNISFMVQYPHILQPCRLVDRVGLVARNLSTNFPCISSCRMRKQTKQRQSPEP 242
           K   +N  N+S   Q  H  + CR     G V RN+    P    CR  K++K +Q P  
Sbjct: 62  KFCYYNNYNLS---QPRHFCKNCRRYWTKGGVLRNV----PVGGGCRKAKRSKTKQVPS- 113

Query: 241 CYNSFACLCTTAPMVHTVLEAHSYGRH 161
             +S A   TT    H V E  S G H
Sbjct: 114 --SSSADKPTTTQDDHHVEEKSSTGSH 138


>At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing
           protein 
          Length = 330

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/95 (23%), Positives = 39/95 (41%)
 Frame = -2

Query: 385 MVQYPHILQPCRLVDRVGLVARNLSTNFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTA 206
           + Q  H  + CR     G   RN+     C  + R +  +    +     N+ +     A
Sbjct: 109 LTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNA 168

Query: 205 PMVHTVLEAHSYGRHIDQALTNIVSYLSIF*PLTY 101
             + T+L +H YG + +  L+ I+S   +  P TY
Sbjct: 169 STISTILSSH-YGGNQESILSQILSPARLMNP-TY 201


>At1g29550.1 68414.m03614 eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative similar to SP|O23252
           Eukaryotic translation initiation factor 4E (eIF-4E)
           (eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01652: Eukaryotic initiation
           factor 4E
          Length = 240

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 202 WEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPPSDMVEECEDIE 381
           W  W+ +  S  N+V+        ++FG +    SLY N  PP +    +D+    + IE
Sbjct: 71  WTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIE 130

Query: 382 P 384
           P
Sbjct: 131 P 131


>At1g55900.1 68414.m06411 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 376

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 298 TESLYLNFSPPAQPGPP 348
           T+S++ +F PP QP PP
Sbjct: 44  TQSMFSDFPPPNQPPPP 60


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 246  SGDWRCLVCFLIRHDDIHGKFVLKFLAT 329
            +GDW  L  +L R+ DIH +  +   +T
Sbjct: 1294 AGDWEILEVYLKRYIDIHARLPVSVAST 1321


>At1g30220.1 68414.m03697 sugar transporter family protein similar
           to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
           [Homo sapiens]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 580

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 226 QSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPPSDMVEE 366
           QS+ +    IG +W    FG++     L++    P   G P + +E+
Sbjct: 508 QSFLSLTEAIGTSWTFLIFGVISVIALLFVMVCVPETKGMPMEEIEK 554


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,360,145
Number of Sequences: 28952
Number of extensions: 185970
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)