Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e01
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.81 
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    25   7.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   10.0 
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   10.0 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   10.0 

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
 Frame = -3

Query: 458 LPGPIPVPLHPYLQLFRPCFLPAETSPLF-F*RLPAAEETDKHRLADRSSV---ETFPAS 291
           +PGPI VP  PY    R     AE SP++     P A        + R S     T P S
Sbjct: 250 VPGPISVPSAPY---GRASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPIS 306

Query: 290 PAKSTARNGPPHPVVSGTGSFGPRQPNDRIMCLQSLHSAALRSFSL 153
           PA+        +P     G   P   +  I       S ++RS SL
Sbjct: 307 PARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSL 352


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 251 PDVVDH-FEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAV 364
           PD V H F Q  +++ +  F P+F        +PPQ +V
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSV 322


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 230 KILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRIEEMFRLV 397
           K L  +  ++  +  Q   Q+  + ++P    L D Y S PQ A +RR+ E    V
Sbjct: 80  KQLEGETLEISRYHSQIIGQIASQVYKP----LIDYYTSSPQTATLRRLAERLSTV 131


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 458  LPGPIPVPLHPYLQLFRPCFLPAETSPLF 372
            LP     P H Y++L  PC LP     LF
Sbjct: 3344 LPSCSQFPFHQYIELINPC-LPLVEGLLF 3371


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 306 NFSCFTCQEYCSKWSTTSGGFWDRI 232
           +F  F   E+C   S T  G++DRI
Sbjct: 219 DFYAFNMYEWCGYSSMTVSGYYDRI 243


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 128 PDLNNDLVLAKNFLKQQSAATGDTLYDHLVDVVQKILSQKPPDVVDHFEQ 277
           P+ N +L+L  + L+++ +   DT+  HL+  ++   S   P ++D+ +Q
Sbjct: 202 PNSNRNLLLNNSMLQEKISWYLDTVELHLLQEIEN-ASDSFPMIIDNLKQ 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,112
Number of Sequences: 5004
Number of extensions: 59826
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)