Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e01
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0) 59 4e-09
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 32 0.37
SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 30 2.0
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_33634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2) 28 7.9
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/163 (25%), Positives = 73/163 (44%)
Frame = +2
Query: 173 QQSAATGDTLYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPP 352
++ A G YDHL V+ ++L+ +P + ++ K+ F+PNFD + D
Sbjct: 130 RRDLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQDDST 189
Query: 353 QLAVVRRIEEMFRLVKSXXXXXXXXXXXXXXXXXXXXNVKPRIADLIDSNYYFKECGFGL 532
++ + R + +F + P I +L + YF++ G GL
Sbjct: 190 EVLLARTQQTLFERRPEKSFIEPEPEPDPELDEDLLESPLPDIMELAN---YFEQAGVGL 246
Query: 533 PDSECYAVYIALNMLAIKEPVSTVRFFGKIYGTKENYYVAETE 661
E + +++AL L P+ + R +GKI G + NY +AE E
Sbjct: 247 NREETFRIFLALKQLVDSHPIRSCRLWGKILGLQGNYIIAEVE 289
>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
Length = 375
Score = 58.8 bits (136), Expect = 4e-09
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +2
Query: 503 YYFKECGFGLPDSECYAVYIALNMLAIKEPVSTVRFFGKIYGTKENYYVAETE 661
+YF++ G GL E + ++++L L +P+ TV F+GK++G + NYY+AE E
Sbjct: 5 FYFEQAGIGLSREEMFRIFLSLKQLVDSKPLQTVHFWGKLFGIENNYYIAEVE 57
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 220 RGPKDPVPETTGCGGPFRAVLL-AGEAGKVSTELRSAKRCLSVS---SAAGSRQKNRGDV 387
R PK +PE GC P +V + G++ + T ++ +K V+ S A ++NRG V
Sbjct: 1251 RTPKKDLPEQKGCKFPETSVKVDQGKSEQEKTLVKKSKETSEVNTGQSGAAWEKENRGKV 1310
Query: 388 SAGKKQGRK 414
+ G + K
Sbjct: 1311 NKGSRDKNK 1319
>SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = -3
Query: 356 AAEETDKHRLADRSSVETFPASPAKSTARNGPPHPVVSGTGSFGPRQPNDRIMCLQSLHS 177
AAE K +S + P + A + PPHPV T S P D C +L +
Sbjct: 104 AAENKQKPERKPSTSTNSTPTTSAATPPTPLPPHPVAKDTSSKSSPSPYDLPSCSGNLWN 163
Query: 176 AALRSFSLIP 147
+ S +P
Sbjct: 164 PVTSANSPLP 173
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 473 PRIADLIDSNYYFKECGFGLPDSECYA 553
PRI DL++ K+ GF LPDS YA
Sbjct: 393 PRITDLVNQIAQEKQLGFTLPDSGHYA 419
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 290 PAKSTARNGPPHPVVSGTGSFGPRQPNDR 204
P+K+ R PH VS GS+GP PN R
Sbjct: 300 PSKNKHRKSSPHNSVSDGGSYGP-PPNSR 327
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 104 IAATENVMPDLNNDLVLAKNFLKQQSAATGDTLYDHLVDVVQKILSQKPPDVVDH 268
++A ++ D L K LKQ S A YDH++D ++ILS PP +H
Sbjct: 2676 VSARYPIIVDQEEKLADLKKQLKQHSPA-----YDHVMDKGRQILSTLPPTGREH 2725
>SB_33634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 290 PAKSTARNGPPHPVVSGTGSFGPRQPNDR 204
P+K+ R PH VS GS+GP PN R
Sbjct: 176 PSKNKHRKSSPHNSVSDGGSYGP-PPNSR 203
>SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)
Length = 181
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 98 DIIAATENVMPDLNNDLVLAKNFLKQQSAATGDTLYDHLVDVVQKILSQKPPDVVDHFEQ 277
DI+ EN +PD +N L + LK + A D D ++ + L K D++D Q
Sbjct: 18 DILKDKENALPDKDNILKDKDDILKDKENALPDK--DDILKDKENALPDK-DDILDDILQ 74
Query: 278 YSWQVKQEK 304
+ +V +K
Sbjct: 75 HKEKVLSDK 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,137,420
Number of Sequences: 59808
Number of extensions: 449463
Number of successful extensions: 1177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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