Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10e01
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34780.1 68414.m04329 protein disulfide isomerase-related con... 29 2.1
At5g66210.2 68418.m08341 calcium-dependent protein kinase family... 29 2.8
At5g66210.1 68418.m08340 calcium-dependent protein kinase family... 29 2.8
At4g17410.1 68417.m02607 expressed protein 29 3.8
At3g44710.1 68416.m04809 expressed protein contains Pfam profile... 28 5.0
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 28 5.0
At4g00310.1 68417.m00039 expressed protein 28 6.6
At1g17820.1 68414.m02206 expressed protein 28 6.6
At4g36070.1 68417.m05135 calcium-dependent protein kinase family... 27 8.7
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 27 8.7
At2g20260.1 68415.m02367 photosystem I reaction center subunit I... 27 8.7
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain... 27 8.7
>At1g34780.1 68414.m04329 protein disulfide isomerase-related
contains weak similarity to Pfam:P08003 protein
disulfide isomerase A4 precursor (Protein ERp-72, ERp72)
[Mus musculus]
Length = 310
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 281 SWQVKQEKFRPNFDLLNDVYLSPPQLAV 364
SW FRP+FD+++ +Y S P A+
Sbjct: 91 SWCPFSRSFRPSFDVISSLYSSIPHFAI 118
>At5g66210.2 68418.m08341 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 523
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 194 DTLYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQL 358
D+ D LVD + + + ++ + WQ++ FDL D Y++P +L
Sbjct: 415 DSNTDGLVDFTEFVAAALHVHQLEEHDSEKWQLRSRAAFEKFDLDKDGYITPEEL 469
>At5g66210.1 68418.m08340 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 523
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 194 DTLYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQL 358
D+ D LVD + + + ++ + WQ++ FDL D Y++P +L
Sbjct: 415 DSNTDGLVDFTEFVAAALHVHQLEEHDSEKWQLRSRAAFEKFDLDKDGYITPEEL 469
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 347 ETDKHRLADRSSVETFPASPAKSTARNGPPHPVVSGTGSFGPRQPNDR 204
+++K R+ + S+V + SP K +R GPP P+ S + R+ +DR
Sbjct: 537 DSEKSRIMNNSAVTS---SPVKPKSRQGPPPPISS---DYDRRRRSDR 578
>At3g44710.1 68416.m04809 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 504
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +2
Query: 89 LEPDIIAATENVMPDLNNDLVLAKNFLKQQSAATGDTLYDHLVDVVQKILSQKPPDVVDH 268
+E D I A ++P + NDL+L +N Q T++D ++K S +++ H
Sbjct: 163 IENDPIFAIPWILPAIRNDLILLEN---QVPFFLLQTIFDR--SKIEK--SSGLNEIIFH 215
Query: 269 FEQYSWQ------VKQEKFRPN--FDLLNDVYL 343
F YS Q +K +K N DL+ ++Y+
Sbjct: 216 FFNYSLQKSNTFWLKHQKVEANHLLDLIRNIYM 248
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 482 ADLIDSNYYFKECGFGLPDSECYAV 556
A+L+D+N KECGFG S+ Y V
Sbjct: 450 ANLLDANKNEKECGFGHDPSKDYFV 474
>At4g00310.1 68417.m00039 expressed protein
Length = 302
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 384 ISSILLTTASCGGDR 340
+SS+LL+TA CGG+R
Sbjct: 9 LSSVLLSTAGCGGER 23
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 277 VLLAGEAGKVSTELRSAKRCLS-VSSAAGSRQKNRGDVSAGKKQGRKS 417
+L+ + K T R + R +S V S + S + D S GKKQGR++
Sbjct: 721 LLVPSSSNKQETNSRGSSREVSAVQSPSRSVASSEEDDSRGKKQGRRA 768
>At4g36070.1 68417.m05135 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 536
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/63 (19%), Positives = 32/63 (50%)
Frame = +2
Query: 194 DTLYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRR 373
D+ D LVD + +++ + ++ + WQ + FD+ D +++P +L + +
Sbjct: 421 DSNTDGLVDFTEFVVAALHVNQLEEHDSEKWQQRSRAAFDKFDIDGDGFITPEELRLNQC 480
Query: 374 IEE 382
+++
Sbjct: 481 LQQ 483
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +3
Query: 399 KARPKKLKIWMKRNRNWTWKKTT*SPGLRTLLTAIIISRSVDSVFR 536
K K+ K+W + + W W+ + G+ LL + + V + R
Sbjct: 113 KREKKEDKVWWSKGKKWQWQPIIQAQGIGVLLLQLSVVMFVMRLLR 158
>At2g20260.1 68415.m02367 photosystem I reaction center subunit IV,
chloroplast, putative / PSI-E, putative (PSAE2)
identical to SP|Q9S714; similar to SP|P12354 Photosystem
I reaction center subunit IV, chloroplast precursor
(PSI-E) {Spinacia oleracea}; contains Pfam profile
PF02427: Photosystem I reaction centre subunit IV / PsaE
Length = 145
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 356 AAEETDKHRLADRSSVETFPASPAKSTARNGPPHPVVSGTGS 231
AAE+T + SS T A+PAK A P P+ GS
Sbjct: 47 AAEDTPPATASSDSSSTTAAAAPAKVPAAKAKPPPIGPKRGS 88
>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1159
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 62 MEKNLCDYMLEPDIIAATENVMPDLNNDLVLAKNFLKQQSAATGDTL-YDHLVDV 223
+++N CD + ++ T MP+ N ++ +F + TG+++ D L DV
Sbjct: 615 VKENTCDGSMASNLKPLTPPKMPNKENPMIQGSSFAQDLPVNTGESIQQDKLHDV 669
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,956,076
Number of Sequences: 28952
Number of extensions: 320807
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -