BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte10d22 (675 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 30 0.27 SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.4 SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 2.5 SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.6 SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 25 10.0 SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 10.0 SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 10.0 >SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizosaccharomyces pombe|chr 1|||Manual Length = 415 Score = 30.3 bits (65), Expect = 0.27 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 131 TDCVPYGTPRKIKDPKLCGHKDKGLVLGVYYNENAK 238 T C G R IK+ C HK KG V+ + Y+E K Sbjct: 274 TSCKIPGVKRIIKEMSNCVHKQKGNVIWLNYDEPTK 309 >SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 776 Score = 27.9 bits (59), Expect = 1.4 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 417 VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDNFNIFQSLPPDSLSYFC 268 +K S PR TN + + N+LD+ +F + D + ++ L YFC Sbjct: 660 IKISQPRNSLQTNGYIEGMANNVLDA-SFNVEDESH---AISDSELGYFC 705 >SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1183 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 326 IPKLGESRIFFDLDPTFAFVAVSGLGSECLTYNVS 430 + KLGE F L P F+ + + G CL Y ++ Sbjct: 868 LTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIA 902 >SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 845 Score = 25.4 bits (53), Expect = 7.6 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -1 Query: 357 KNILDSPNFGMGDNFNIFQSLPPDSLS 277 + I+ SP+ +GD++NI PP S++ Sbjct: 385 ETIIKSPSSFIGDSYNIANIDPPSSMN 411 >SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosaccharomyces pombe|chr 1|||Manual Length = 439 Score = 25.0 bits (52), Expect = 10.0 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = -1 Query: 411 HSDPRPDTATNANVGSKSKNILDSPNFGMGDNF 313 + D +PD GSK++N++ + +FGM + Sbjct: 132 YRDIKPDNFLIGFPGSKTENVIYAVDFGMAKQY 164 >SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 773 Score = 25.0 bits (52), Expect = 10.0 Identities = 15/58 (25%), Positives = 26/58 (44%) Frame = -2 Query: 296 YHRILYHTFVHLQ*EWQVHLWRFHYNKLPRQDLCLYDHKVSDPLFCAAFRMAHSQYVV 123 +H I T + EW++ LW+F N L + +Y + +F F + Q V+ Sbjct: 86 WHYIWTCTSLKSNGEWKILLWKF--NDLEEESEVVYRDISNQQIFALHFISSTGQLVI 141 >SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 786 Score = 25.0 bits (52), Expect = 10.0 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -2 Query: 224 YNKLPRQDLCLYDHKVSDPLFC 159 Y L R+ L HK+ DP++C Sbjct: 473 YGGLSREFFFLLSHKMFDPIYC 494 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,002,809 Number of Sequences: 5004 Number of extensions: 66156 Number of successful extensions: 153 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 153 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 309878492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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